RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 CCDC28AQ8IWP9 274 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 SLC35F3Q8IY50 421 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 NMNAT2Q9BZQ4 307 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 FAM60AQ9NP50 221 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 LRIT1Q9P2V4 623 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 ARHGEF17Q96PE2 2063 aaPredicted RBP17.13■□□□□ 0.33
CPSF3-201ENST00000238112 A0A0A6YYC8 382 aaPredicted RBP17.13■□□□□ 0.33
CPSF3-201ENST00000238112 KIR2DS5A0A0G2JLQ3 304 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 A0A0G2JNG1 304 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 SERINC4A6NH21 518 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 IDSB3KWA1 339 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 I3L1I5 382 aaPredicted RBP17.13■□□□□ 0.33
CPSF3-201ENST00000238112 KIR2DS3K7RE56 304 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 PIN1P1O15428 100 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 PRAMEF2O60811 474 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 GLCEO94923 617 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 CTSBP07858 339 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 RNH1P13489 461 aaKnown RBP17.13■□□□□ 0.33
CPSF3-201ENST00000238112 ST6GAL1P15907 406 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 POU3F3P20264 500 aaPredicted RBP17.13■□□□□ 0.33
CPSF3-201ENST00000238112 KIR2DS5Q14953 304 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 SFRP4Q6FHJ7 346 aaPredicted RBP17.13■□□□□ 0.33
CPSF3-201ENST00000238112 LEG1Q6P5S2 330 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 FAM199XQ6PEV8 388 aaPredicted RBP17.13■□□□□ 0.33
CPSF3-201ENST00000238112 GPBAR1Q8TDU6 330 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 DGAT2Q96PD7 388 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 DDOQ99489 341 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 EMC3Q9P0I2 261 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 KLHL9Q9P2J3 617 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 SCP2D1Q9UJQ7 156 aa17.13■□□□□ 0.33
CPSF3-201ENST00000238112 MRPS33Q9Y291 106 aaKnown RBP17.13■□□□□ 0.33
CPSF3-201ENST00000238112 ITGA10O75578 1167 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 CTHP32929 405 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 TPMTP51580 245 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 CCR9P51686 369 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 TFF2Q03403 129 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 CAMK2DQ13557 499 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 IL10RAQ13651 578 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 ISXQ2M1V0 245 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 FCRLAQ7L513 359 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 OR6C4Q8NGE1 309 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 GCDHQ92947 438 aaPredicted RBP17.12■□□□□ 0.33
CPSF3-201ENST00000238112 NXPE2Q96DL1 559 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 GFI1Q99684 422 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 CLEC4MQ9H2X3 399 aaPredicted RBP17.12■□□□□ 0.33
CPSF3-201ENST00000238112 TCEAL2Q9H3H9 227 aaPredicted RBP17.12■□□□□ 0.33
CPSF3-201ENST00000238112 PLEKHA1Q9HB21 404 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 HRASLSQ9HDD0 168 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 DLL4Q9NR61 685 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 RXFP3Q9NSD7 469 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 V9GY05 133 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 OR5K3A6NET4 321 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 FAM171A2A8MVW0 826 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 TGFBR3LH3BV60 316 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 GABARAPH6UMI1 98 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 ZNF81P51508 661 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 PGDP52209 483 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 FAM209AQ5JX71 171 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 JAZF1Q86VZ6 243 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 OR13H1Q8NG92 308 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 OR4C3Q8NH37 302 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 OR52I2Q8NH67 350 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 C3orf49Q96BT1 292 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 SLC25A38Q96DW6 304 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 ALG12Q9BV10 488 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 SEMA6CQ9H3T2 930 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 LIN7BQ9HAP6 207 aa17.12■□□□□ 0.33
CPSF3-201ENST00000238112 WSB2Q9NYS7 404 aaPredicted RBP17.12■□□□□ 0.33
CPSF3-201ENST00000238112 EIF3KQ9UBQ5 218 aaKnown RBP17.12■□□□□ 0.33
CPSF3-201ENST00000238112 ATG2AQ2TAZ0 1938 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 F5P12259 2224 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 NAP1L6A6NFF2 107 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 OR5K4A6NMS3 321 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 BLOC1S5-TXNDC5H3BN57 136 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 KHNYNO15037 678 aaKnown RBP17.11■□□□□ 0.33
CPSF3-201ENST00000238112 KHDRBS3O75525 346 aaKnown RBP17.11■□□□□ 0.33
CPSF3-201ENST00000238112 KRT33AO76009 404 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 ZFPL1O95159 310 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 GRK6P43250 576 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 NANOS3P60323 173 aaKnown RBP17.11■□□□□ 0.33
CPSF3-201ENST00000238112 RPS4XP62701 263 aaKnown RBP17.11■□□□□ 0.33
CPSF3-201ENST00000238112 FAM220AQ7Z4H9 259 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 SERPINA12Q8IW75 414 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 C10orf53Q8N6V4 93 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 BCORP1Q8N888 145 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 FCAMRQ8WWV6 532 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 S100A16Q96FQ6 103 aaKnown RBP17.11■□□□□ 0.33
CPSF3-201ENST00000238112 SLC19A3Q9BZV2 496 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 DNAH14Q0VDD8 3507 aa17.11■□□□□ 0.33
CPSF3-201ENST00000238112 ELOA3DA6NLF2 546 aaPredicted RBP17.1■□□□□ 0.33
CPSF3-201ENST00000238112 GMDSO60547 372 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 PRAF2O60831 178 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 CTNSO60931 367 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 TMEM127O75204 238 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 HPXP02790 462 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 CELA2BP08218 269 aaPredicted RBP17.1■□□□□ 0.33
CPSF3-201ENST00000238112 PSMB1P20618 241 aaKnown RBP17.1■□□□□ 0.33
CPSF3-201ENST00000238112 DPP4P27487 766 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 NUDT1P36639 197 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 MAGEB1P43366 347 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms