RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 INTS14Q96SY0 518 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ARHGAP9Q9BRR9 750 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM265A0A087WTH1 108 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 LOC105371267A0A1B0GV96 52 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SOWAHBA6NEL2 793 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 MFSD2BA6NFX1 497 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF726A6NNF4 738 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 M0R3H8 397 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ST8SIA3O43173 380 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 PCDH8O95206 1070 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SIX6O95475 246 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 OLFM2O95897 454 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CSNK1DP48730 415 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF252P-AS1Q0IIN9 211 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 MADCAM1Q13477 382 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CNN3Q15417 329 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 DUSP28Q4G0W2 176 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 TPGS2Q68CL5 300 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 FAM180BQ6P0A1 224 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 UNQ6126/PRO20091Q6UXV3 157 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CD300LDQ6UXZ3 194 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SERINC5Q86VE9 423 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 NRSN1Q8IZ57 195 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 DTWD2Q8NBA8 298 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 INTS12Q96CB8 462 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 GDF2Q9UK05 429 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 EXOGQ9Y2C4 368 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CDRT15L2A8MXV6 281 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 F6UZH7 168 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 YY2O15391 372 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SULT1A3P0DMM9 295 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SULT1A4P0DMN0 295 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 GP1BBP13224 206 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 PGCP20142 388 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 GNRHRP30968 328 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SSTR4P31391 388 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CCKBRP32239 447 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 PCP4P48539 62 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CLDN6P56747 220 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 HYAL2Q12891 473 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 HYAL4Q2M3T9 481 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SLC10A6Q3KNW5 377 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 MRM1Q6IN84 353 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 BTNL8Q6UX41 500 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ABHD4Q8TB40 342 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 FAM213BQ8TBF2 198 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 HERPUD2Q9BSE4 406 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SUV39H2Q9H5I1 410 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 RASL12Q9NYN1 266 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 NUP188Q5SRE5 1749 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 FER1L4A9Z1Z3 1794 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 A0A1W2PPQ1 181 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 MTMR11A4FU01 709 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF850A8MQ14 1090 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 RAB27BO00194 218 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 EPHX1P07099 455 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 LAMP1P11279 417 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 EPXP11678 715 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF43P17038 809 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 KLRK1P26718 216 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 PSMG4Q5JS54 123 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 NXPE4Q6UWF7 544 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CDRT4Q8N9R6 151 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM229BQ8NBD8 167 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 OR52B6Q8NGF0 335 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 GPR152Q8TDT2 470 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF689Q96CS4 500 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 KIRREL1Q96J84 757 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 DPH2Q9BQC3 489 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SLC17A9Q9BYT1 436 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 RAB18Q9NP72 206 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 MYH15Q9Y2K3 1946 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ENPP3O14638 875 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 NRP1O14786 923 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 TSPAN3O60637 253 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 MAFKO60675 156 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 NME1P15531 152 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ELAVL4P26378 380 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CSNK1A1P48729 337 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 NKPD1Q17RQ9 610 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 NSUN5P2Q63ZY6 315 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SBSNQ6UWP8 590 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SLC22A24Q8N4F4 322 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 MTMR14Q8NCE2 650 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 KHSRPQ92945 711 aaKnown RBP eCLIP4.35□□□□□ -1.712e-6■■■□□ 17.2
SCN1A-220ENST00000641603 ZNF75AQ96N20 296 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 TLR9Q9NR96 1032 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 RREB1Q92766 1687 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 G3V3Q6 166 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SULT2B1O00204 365 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 XRCC3O43542 346 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 GALTP07902 379 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 PRF1P14222 555 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 DDTP30046 118 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CORO1AP31146 461 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CTHP32929 405 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SURF2Q15527 256 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 VAMP3Q15836 100 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 FNDC3BQ53EP0 1204 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF626Q68DY1 528 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms