RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 OR4F15Q8NGB8 312 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 OR6C4Q8NGE1 309 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 OR52B4Q8NGK2 314 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 OR10T2Q8NGX3 314 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 OR6X1Q8NH79 312 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 OR1F12Q8NHA8 337 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 PNPT1Q8TCS8 783 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 DTX3LQ8TDB6 740 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CD300LFQ8TDQ1 290 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 ZFP90Q8TF47 636 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 ANKRD49Q8WVL7 239 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 PIGCQ92535 297 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 NDRG1Q92597 394 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 RPL3LQ92901 407 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 ASB9Q96DX5 294 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 TM4SF19Q96DZ7 209 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 NEURL3Q96EH8 262 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 PELI1Q96FA3 418 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 PAGE5Q96GU1 130 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 HPDLQ96IR7 371 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 ITCHQ96J02 903 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 AKR1E2Q96JD6 320 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 C4orf36Q96KX1 117 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 NSMCE2Q96MF7 247 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 FOPNLQ96NB1 174 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 RUFY1Q96T51 708 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 HIST1H4GQ99525 98 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 P2RY13Q9BPV8 354 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 TMEM246Q9BRR3 403 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 PELOQ9BRX2 385 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 HDHD3Q9BSH5 251 aaPredicted RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 SPXQ9BT56 116 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 RIOK2Q9BVS4 552 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 ACAT2Q9BWD1 397 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 SPATA16Q9BXB7 569 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 NFKBIZQ9BYH8 718 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CRNKL1Q9BZJ0 848 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 POLR2J2Q9GZM3 115 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 POLR2J3Q9H1A7 115 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 SPNS1Q9H2V7 528 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 THAP9Q9H5L6 903 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 ZNF385DQ9H6B1 395 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 DHX33Q9H6R0 707 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 RNF167Q9H6Y7 350 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 SUDS3Q9H7L9 328 aaPredicted RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 VCPKMTQ9H867 229 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 UGT1A7Q9HAW7 530 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 UGT1A10Q9HAW8 530 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 UGT1A8Q9HAW9 530 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 FOLH1BQ9HBA9 442 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 SLC40A1Q9NP59 571 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 YAE1D1Q9NRH1 226 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 NUDT15Q9NV35 164 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 QPCTLQ9NXS2 382 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 ZNF226Q9NYT6 803 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 SLC25A37Q9NYZ2 338 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 NINJ2Q9NZG7 142 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 XCL2Q9UBD3 114 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 STAP1Q9ULZ2 295 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 PRPF19Q9UMS4 504 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 PIN4Q9Y237 131 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 GSTK1Q9Y2Q3 226 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CARHSP1Q9Y2V2 147 aaKnown RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 MAD1L1Q9Y6D9 718 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CLCA3PQ9Y6N3 262 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 S4R3C0 116 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 V9GY05 133 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 SEC16AO15027 2179 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CARMIL3Q8ND23 1372 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 KIF26AQ9ULI4 1882 aaPredicted RBP0.16□□□□□ -2.38
VPS35-212ENST00000640313 CACNA1GO43497 2377 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 CUX2O14529 1486 aa0.16□□□□□ -2.38
VPS35-212ENST00000640313 SHROOM3Q8TF72 1996 aa0.15□□□□□ -2.38
VPS35-212ENST00000640313 MROH7-TTC4A0A0A0MT08 1334 aa0.15□□□□□ -2.38
VPS35-212ENST00000640313 SF3B1O75533 1304 aaKnown RBP eCLIP0.15□□□□□ -2.38
VPS35-212ENST00000640313 RPGRIP1LQ68CZ1 1315 aa0.15□□□□□ -2.38
VPS35-212ENST00000640313 DOCK8Q8NF50 2099 aa0.15□□□□□ -2.38
VPS35-212ENST00000640313 RAI1Q7Z5J4 1906 aaPredicted RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 NCAPD2Q15021 1401 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 WDR62O43379 1518 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SYNE2Q8WXH0 6885 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 IGLV11-55A0A075B6I3 123 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 IGLV2-18A0A075B6J9 118 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 NSG1A0A0A6YYJ2 146 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 IGKV1D-13A0A0B4J2D9 117 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 IGHV5-51A0A0C4DH38 117 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 A0A0U1RQG5 324 aaPredicted RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 A0A1B0GUS0 222 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 A0A1W2PNV4 684 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 FAM170AA1A519 330 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 GSAPA4D1B5 854 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 LRP5LA4QPB2 252 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 RBMY1BA6NDE4 496 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 RBMY1EA6NEQ0 496 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 HELTA6NFD8 242 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 TMEM110-MUSTN1A8MSY1 372 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 IDSB3KWA1 339 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 LAD1O00515 517 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 PEX7O00628 323 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 BET1O15155 118 aa0.15□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms