RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ARMC7Q9H6L4 198 aa17.05■□□□□ 0.32
CLN3-260ENST00000637578 ZC3H12DA2A288 527 aaKnown RBP17.04■□□□□ 0.32
CLN3-260ENST00000637578 ADAP00813 363 aa17.04■□□□□ 0.32
CLN3-260ENST00000637578 SLC35A1P78382 337 aa17.04■□□□□ 0.32
CLN3-260ENST00000637578 ITGADQ13349 1161 aa17.04■□□□□ 0.32
CLN3-260ENST00000637578 DEFB113Q30KQ7 82 aa17.04■□□□□ 0.32
CLN3-260ENST00000637578 BEX5Q5H9J7 111 aa17.04■□□□□ 0.32
CLN3-260ENST00000637578 ZNF311Q5JNZ3 666 aa17.04■□□□□ 0.32
CLN3-260ENST00000637578 C6orf89Q6UWU4 347 aa17.04■□□□□ 0.32
CLN3-260ENST00000637578 KRT73Q86Y46 540 aa17.04■□□□□ 0.32
CLN3-260ENST00000637578 MICU2Q8IYU8 434 aa17.04■□□□□ 0.32
CLN3-260ENST00000637578 PIGXQ8TBF5 258 aa17.04■□□□□ 0.32
CLN3-260ENST00000637578 S100PBPQ96BU1 408 aa17.04■□□□□ 0.32
CLN3-260ENST00000637578 ZNF775Q96BV0 537 aaPredicted RBP17.04■□□□□ 0.32
CLN3-260ENST00000637578 CACYBPQ9HB71 228 aaKnown RBP17.04■□□□□ 0.32
CLN3-260ENST00000637578 EMC3Q9P0I2 261 aa17.04■□□□□ 0.32
CLN3-260ENST00000637578 ELOVL7A1L3X0 281 aa17.03■□□□□ 0.32
CLN3-260ENST00000637578 EIF1BO60739 113 aaKnown RBP17.03■□□□□ 0.32
CLN3-260ENST00000637578 RAMP1O60894 148 aa17.03■□□□□ 0.32
CLN3-260ENST00000637578 NTF4P34130 210 aa17.03■□□□□ 0.32
CLN3-260ENST00000637578 INTS11Q5TA45 600 aaKnown RBP17.03■□□□□ 0.32
CLN3-260ENST00000637578 LSRQ86X29 649 aaPredicted RBP17.03■□□□□ 0.32
CLN3-260ENST00000637578 CCDC103Q8IW40 242 aa17.03■□□□□ 0.32
CLN3-260ENST00000637578 RNF148Q8N7C7 305 aa17.03■□□□□ 0.32
CLN3-260ENST00000637578 ZNF607Q96SK3 696 aa17.03■□□□□ 0.32
CLN3-260ENST00000637578 CDRT15Q96T59 188 aa17.03■□□□□ 0.32
CLN3-260ENST00000637578 KCTD14Q9BQ13 255 aaPredicted RBP17.03■□□□□ 0.32
CLN3-260ENST00000637578 USB1Q9BQ65 265 aaKnown RBP17.03■□□□□ 0.32
CLN3-260ENST00000637578 PRSS50Q9UI38 385 aa17.03■□□□□ 0.32
CLN3-260ENST00000637578 ITPR3Q14573 2671 aa17.03■□□□□ 0.32
CLN3-260ENST00000637578 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.02■□□□□ 0.32
CLN3-260ENST00000637578 PRORSD1PA6NEY8 169 aa17.02■□□□□ 0.32
CLN3-260ENST00000637578 GPR171O14626 319 aa17.02■□□□□ 0.32
CLN3-260ENST00000637578 PRKAR1BP31321 381 aa17.02■□□□□ 0.32
CLN3-260ENST00000637578 OR2B6P58173 313 aa17.02■□□□□ 0.32
CLN3-260ENST00000637578 COPZ1P61923 177 aa17.02■□□□□ 0.32
CLN3-260ENST00000637578 VEZF1Q14119 521 aa17.02■□□□□ 0.32
CLN3-260ENST00000637578 DNAJA3Q96EY1 480 aa17.02■□□□□ 0.32
CLN3-260ENST00000637578 TAS2R1Q9NYW7 299 aa17.02■□□□□ 0.32
CLN3-260ENST00000637578 PRR14LQ5THK1 2151 aa17.02■□□□□ 0.32
CLN3-260ENST00000637578 LIPT2A6NK58 231 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 M0QX08 132 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 NPIPB7O75200 414 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 MFN2O95140 757 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 OPN1SWP03999 348 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 COX5AP20674 150 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 FPR1P21462 350 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 CXCR1P25024 350 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 NR1H2P55055 460 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 DMTNQ08495 405 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 BNIP1Q12981 228 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 TSC22D1Q15714 1073 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 DHRS4L2Q6PKH6 230 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 PAQR6Q6TCH4 344 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 PATL1Q86TB9 770 aaKnown RBP17.02■□□□□ 0.31
CLN3-260ENST00000637578 ARMC8Q8IUR7 673 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 HSD17B8Q92506 261 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 KISS1RQ969F8 398 aaPredicted RBP17.02■□□□□ 0.31
CLN3-260ENST00000637578 C3orf49Q96BT1 292 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 TAMM41Q96BW9 452 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 TMEM204Q9BSN7 226 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 SPATA5L1Q9BVQ7 753 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 BEX4Q9NWD9 120 aaPredicted RBP17.02■□□□□ 0.31
CLN3-260ENST00000637578 MED13LQ71F56 2210 aa17.02■□□□□ 0.31
CLN3-260ENST00000637578 TMEM229AB2RXF0 380 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 SERPINB7O75635 380 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 IL32P24001 234 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 CRYBA2P53672 197 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 SLC17A1Q14916 467 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 ACKR1Q16570 336 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 SAMD4BQ5PRF9 694 aaKnown RBP17.01■□□□□ 0.31
CLN3-260ENST00000637578 SEZ6L2Q6UXD5 910 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 CCDC80Q76M96 950 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 ATG4DQ86TL0 474 aaPredicted RBP17.01■□□□□ 0.31
CLN3-260ENST00000637578 COMTD1Q86VU5 262 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 TGIF2LYQ8IUE0 185 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 CADM2Q8N3J6 435 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 SMYD1Q8NB12 490 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 FAM156AQ8NDB6 213 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 PIP5K1AQ99755 562 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 NAA11Q9BSU3 229 aaPredicted RBP17.01■□□□□ 0.31
CLN3-260ENST00000637578 TMUB1Q9BVT8 246 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 C1orf21Q9H246 121 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 CD300AQ9UGN4 299 aa17.01■□□□□ 0.31
CLN3-260ENST00000637578 NOSIPQ9Y314 301 aaKnown RBP17.01■□□□□ 0.31
CLN3-260ENST00000637578 A8MVM7 634 aa17■□□□□ 0.31
CLN3-260ENST00000637578 TPST1O60507 370 aa17■□□□□ 0.31
CLN3-260ENST00000637578 GPIP06744 558 aa17■□□□□ 0.31
CLN3-260ENST00000637578 IGHV1-2P23083 117 aa17■□□□□ 0.31
CLN3-260ENST00000637578 TAB1Q15750 504 aa17■□□□□ 0.31
CLN3-260ENST00000637578 FBXW9Q5XUX1 488 aa17■□□□□ 0.31
CLN3-260ENST00000637578 BHLHA15Q7RTS1 189 aaPredicted RBP17■□□□□ 0.31
CLN3-260ENST00000637578 ZNF100Q8IYN0 542 aa17■□□□□ 0.31
CLN3-260ENST00000637578 LSMEM1Q8N8F7 131 aa17■□□□□ 0.31
CLN3-260ENST00000637578 SLC7A6OSQ96CW6 309 aaPredicted RBP17■□□□□ 0.31
CLN3-260ENST00000637578 MAP1AP78559 2803 aaPredicted RBP16.99■□□□□ 0.31
CLN3-260ENST00000637578 CXCR6O00574 342 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 GSTA4O15217 222 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 FRS3O43559 492 aa16.99■□□□□ 0.31
CLN3-260ENST00000637578 HSD17B1P14061 328 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms