RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 TRAV36DV7A0A075B6V5 113 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 EEF1E1-BLOC1S5C9J1V9 151 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 C19orf84I3L1E1 186 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 EEF1E1O43324 174 aaKnown RBP14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 RAMP1O60894 148 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 ATP5HO75947 161 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 CGAP01215 116 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 PTNP21246 168 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 AGTR1P30556 359 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 ASCL1P50553 236 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 CTBP2P56545 445 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 RASGEF1BQ0VAM2 473 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 TRIM25Q14258 630 aaKnown RBP14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 DNAL1Q4LDG9 190 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 FAM69AQ5T7M9 428 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 PAQR6Q6TCH4 344 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 CCDC103Q8IW40 242 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 TUSC5Q8IXB3 177 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 TAAR8Q969N4 342 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 MPP4Q96JB8 637 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 PRRC1Q96M27 445 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 PRSS27Q9BQR3 290 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 BTBD10Q9BSF8 475 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 NAA11Q9BSU3 229 aaPredicted RBP14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 THTPAQ9BU02 230 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 BCO1Q9HAY6 547 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 HCFC1P51610 2035 aa14.74□□□□□ -0.05
CCDC28A-202ENST00000611852 ZNF716A6NP11 495 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 OR2T1O43869 369 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 FZD7O75084 574 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 AKR7A3O95154 331 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 YES1P07947 543 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 THRBP10828 461 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 YAP1P46937 504 aaKnown RBP14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 MS4A2Q01362 244 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 PDK3Q15120 406 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 FBXL19-AS1Q494R0 122 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 TSEN54Q7Z6J9 526 aaKnown RBP14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 TMEM99Q8N816 258 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 OR6K3Q8NGY3 331 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 PIGXQ8TBF5 258 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 SLC25A36Q96CQ1 311 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 EPYCQ99645 322 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 MUC13Q9H3R2 512 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 CHST11Q9NPF2 352 aa14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 NPDC1Q9NQX5 325 aaPredicted RBP14.73□□□□□ -0.05
CCDC28A-202ENST00000611852 IGKV3D-15A0A087WSY6 115 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 AQP7P3A6NL99 342 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 A8MXE2 369 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 J3KTA2 159 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 MSTNO14793 375 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 FFAR1O14842 300 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 SMNDC1O75940 238 aaKnown RBP eCLIP14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 CD8BP10966 210 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 ATP6V1B2P21281 511 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 COL8A1P27658 744 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 P2RY4P51582 365 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 SLC16A1P53985 500 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 TMEM201Q5SNT2 666 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 OTUD3Q5T2D3 398 aaPredicted RBP14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 TTC33Q6PID6 262 aaPredicted RBP14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 CYP2R1Q6VVX0 501 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 LUZP2Q86TE4 346 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 NKAIN4Q8IVV8 208 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 OR6S1Q8NH40 331 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 CCDC124Q96CT7 223 aaKnown RBP14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 ASB9Q96DX5 294 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 PYURFQ96I23 114 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 C7orf34Q96L11 122 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 ZNF300Q96RE9 604 aaPredicted RBP14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 TACO1Q9BSH4 297 aaKnown RBP14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 PLSCR4Q9NRQ2 329 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 PROCRQ9UNN8 238 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 RRP15Q9Y3B9 282 aaKnown RBP14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 V9GYQ6 96 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 ADGRG4Q8IZF6 3080 aa14.72□□□□□ -0.05
CCDC28A-202ENST00000611852 ZNF724A8MTY0 619 aa14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 BGLAPP02818 100 aa14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 SEMG1P04279 462 aa14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 FUT4P22083 530 aa14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 ST3GAL3Q11203 375 aa14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 SP5Q6BEB4 398 aaPredicted RBP14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 LCN8Q6JVE9 175 aa14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 PGM2L1Q6PCE3 622 aa14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 NUFIP2Q7Z417 695 aaKnown RBP14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 DHFR2Q86XF0 187 aa14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 OFCC1Q8IZS5 231 aa14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 ZNF775Q96BV0 537 aaPredicted RBP14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 SLC19A3Q9BZV2 496 aa14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 OPN3Q9H1Y3 402 aaPredicted RBP14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 NDUFAF4Q9P032 175 aa14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 RHCGQ9UBD6 479 aa14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 ENPP4Q9Y6X5 453 aa14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 ASH1LQ9NR48 2969 aaKnown RBP14.71□□□□□ -0.05
CCDC28A-202ENST00000611852 DNAJC8O75937 253 aaPredicted RBP14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 PRSS23O95084 383 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 IFNA8P32881 189 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 RBM34P42696 430 aaKnown RBP14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 RASSF2P50749 326 aa14.71□□□□□ -0.06
CCDC28A-202ENST00000611852 VLDLRP98155 873 aa14.71□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms