RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 HTRA1Q92743 480 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 IP6K3Q96PC2 410 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 KCNS3Q9BQ31 491 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 SRRQ9GZT4 340 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 EGLN3Q9H6Z9 239 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 P4HTMQ9NXG6 502 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 TMEM5Q9Y2B1 443 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 NPFFR2Q9Y5X5 522 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 SPIN1Q9Y657 262 aaPredicted RBP10.68□□□□□ -0.7
VRK3-223ENST00000601341 CFAP54Q96N23 3096 aa10.68□□□□□ -0.7
VRK3-223ENST00000601341 TRAPPC13A5PLN9 417 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 SERINC4A6NH21 518 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 OR6C70A6NIJ9 312 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 WWP2O00308 870 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 RGS5O15539 181 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 HLA-DPB1P04440 258 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 NGFRP08138 427 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 LIMS3P0CW19 117 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 LIMS4P0CW20 117 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 LIPCP11150 499 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 TBXA2RP21731 343 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 SLC1A3P43003 542 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 RPS5P46782 204 aaKnown RBP10.67□□□□□ -0.7
VRK3-223ENST00000601341 SCN1BQ07699 218 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 ASAH1Q13510 395 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 EFR3AQ14156 821 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 FGFBP1Q14512 234 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 GLYR1Q49A26 553 aaPredicted RBP10.67□□□□□ -0.7
VRK3-223ENST00000601341 KLHL26Q53HC5 615 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 AGAP6Q5VW22 663 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 NCCRP1Q6ZVX7 275 aaPredicted RBP10.67□□□□□ -0.7
VRK3-223ENST00000601341 GRAMD2AQ8IUY3 354 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 IL17RDQ8NFM7 739 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 SLC22A8Q8TCC7 542 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 SLC35B4Q969S0 331 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 TRMT61AQ96FX7 289 aaKnown RBP10.67□□□□□ -0.7
VRK3-223ENST00000601341 AGAP4Q96P64 663 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 INPP5EQ9NRR6 644 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 SNTG1Q9NSN8 517 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 IL17BQ9UHF5 180 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 FBXL4Q9UKA2 621 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 CPSF4LA6NMK7 179 aaKnown RBP10.67□□□□□ -0.7
VRK3-223ENST00000601341 FRS3O43559 492 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 ICOSLGO75144 302 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 PPM1BO75688 479 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 CDRT1O95170 752 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 ADH7P40394 386 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 ZNF136P52737 540 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 IL10RAQ13651 578 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 RIN1Q13671 783 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 ZNF79Q15937 498 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 ZNF544Q6NX49 715 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 C16orf47Q6ZP98 133 aaPredicted RBP10.67□□□□□ -0.7
VRK3-223ENST00000601341 BCDIN3DQ7Z5W3 292 aaKnown RBP10.67□□□□□ -0.7
VRK3-223ENST00000601341 KLHL36Q8N4N3 616 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 TM9SF4Q92544 642 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 FAM46AQ96IP4 442 aaKnown RBP10.67□□□□□ -0.7
VRK3-223ENST00000601341 INIPQ9NRY2 104 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 RYDENQ9NUL5 291 aaKnown RBP10.67□□□□□ -0.7
VRK3-223ENST00000601341 PLEKHB1Q9UF11 243 aaPredicted RBP10.67□□□□□ -0.7
VRK3-223ENST00000601341 TBC1D24Q9ULP9 559 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 SLC35A3Q9Y2D2 325 aa10.67□□□□□ -0.7
VRK3-223ENST00000601341 CAB39Q9Y376 341 aaPredicted RBP10.67□□□□□ -0.7
VRK3-223ENST00000601341 MRPS18BQ9Y676 258 aaKnown RBP10.67□□□□□ -0.7
VRK3-223ENST00000601341 J3QRE1 110 aa10.66□□□□□ -0.7
VRK3-223ENST00000601341 OR2J2O76002 312 aa10.66□□□□□ -0.7
VRK3-223ENST00000601341 CSTAP01040 98 aa10.66□□□□□ -0.7
VRK3-223ENST00000601341 SDC2P34741 201 aa10.66□□□□□ -0.7
VRK3-223ENST00000601341 RNF144AP50876 292 aaPredicted RBP10.66□□□□□ -0.7
VRK3-223ENST00000601341 TPTEP56180 551 aa10.66□□□□□ -0.7
VRK3-223ENST00000601341 PPP3R1P63098 170 aa10.66□□□□□ -0.7
VRK3-223ENST00000601341 FOXD4Q12950 439 aaPredicted RBP10.66□□□□□ -0.7
VRK3-223ENST00000601341 PAQR6Q6TCH4 344 aa10.66□□□□□ -0.7
VRK3-223ENST00000601341 ZNF550Q7Z398 422 aa10.66□□□□□ -0.7
VRK3-223ENST00000601341 ARIH2OSQ8N7S6 290 aa10.66□□□□□ -0.7
VRK3-223ENST00000601341 ADAMTS17Q8TE56 1095 aa10.66□□□□□ -0.7
VRK3-223ENST00000601341 CNOT9Q92600 299 aaKnown RBP10.66□□□□□ -0.7
VRK3-223ENST00000601341 HS6ST2Q96MM7 605 aa10.66□□□□□ -0.7
VRK3-223ENST00000601341 DNAJB12Q9NXW2 375 aaKnown RBP10.66□□□□□ -0.7
VRK3-223ENST00000601341 CNIH4Q9P003 139 aa10.66□□□□□ -0.7
VRK3-223ENST00000601341 H2AFY2Q9P0M6 372 aaPredicted RBP10.66□□□□□ -0.7
VRK3-223ENST00000601341 BAIAP2Q9UQB8 552 aa10.66□□□□□ -0.7
VRK3-223ENST00000601341 A0A1W2PQD3 144 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 TRABD2BA6NFA1 517 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 ALG1L2C9J202 215 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 RCBTB2O95199 551 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 HLA-DQB1P01920 261 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 THY1P04216 161 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 SERPINA7P05543 415 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 CELA2AP08217 269 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 GKN3PP0CG01 181 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 IL7P13232 177 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 CASP3P42574 277 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 LSM11P83369 360 aaKnown RBP eCLIP10.65□□□□□ -0.7
VRK3-223ENST00000601341 TGIF1Q15583 401 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 TRAM1Q15629 374 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 CRTC2Q53ET0 693 aaPredicted RBP10.65□□□□□ -0.7
VRK3-223ENST00000601341 C22orf42Q6IC83 251 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 ZNF613Q6PF04 617 aa10.65□□□□□ -0.7
VRK3-223ENST00000601341 TMPRSS11FQ6ZWK6 438 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms