RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PIK3C3Q8NEB9 887 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 LILRB4Q8NHJ6 448 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 ABHD3Q8WU67 409 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 TAAR8Q969N4 342 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 GMPPAQ96IJ6 420 aaPredicted RBP17.27■□□□□ 0.36
UPF1-209ENST00000600310 FNDC11Q9BVV2 318 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 SFXN3Q9BWM7 321 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 SLC19A3Q9BZV2 496 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 MAGIXQ9H6Y5 334 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 GP6Q9HCN6 339 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 IL1RAPQ9NPH3 570 aa17.27■□□□□ 0.36
UPF1-209ENST00000600310 NCOA6Q14686 2063 aaPredicted RBP17.27■□□□□ 0.35
UPF1-209ENST00000600310 A0A1W2PNV4 684 aa17.26■□□□□ 0.35
UPF1-209ENST00000600310 hCG_2039718K7EN88 272 aa17.26■□□□□ 0.35
UPF1-209ENST00000600310 OPRM1P35372 400 aa17.26■□□□□ 0.35
UPF1-209ENST00000600310 ABLIM2Q6H8Q1 611 aa17.26■□□□□ 0.35
UPF1-209ENST00000600310 MCEMP1Q8IX19 187 aa17.26■□□□□ 0.35
UPF1-209ENST00000600310 HS6ST2Q96MM7 605 aa17.26■□□□□ 0.35
UPF1-209ENST00000600310 NAA11Q9BSU3 229 aaPredicted RBP17.26■□□□□ 0.35
UPF1-209ENST00000600310 NMNAT1Q9HAN9 279 aaPredicted RBP17.26■□□□□ 0.35
UPF1-209ENST00000600310 MAN2C1Q9NTJ4 1040 aa17.26■□□□□ 0.35
UPF1-209ENST00000600310 RHCGQ9UBD6 479 aa17.26■□□□□ 0.35
UPF1-209ENST00000600310 DIDO1Q9BTC0 2240 aaKnown RBP17.26■□□□□ 0.35
UPF1-209ENST00000600310 NAV2Q8IVL1 2488 aa17.26■□□□□ 0.35
UPF1-209ENST00000600310 ARHGAP21Q5T5U3 1957 aa17.26■□□□□ 0.35
UPF1-209ENST00000600310 RELNP78509 3460 aa17.26■□□□□ 0.35
UPF1-209ENST00000600310 ZNF814B7Z6K7 855 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 DVL2O14641 736 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 SS18L1O75177 396 aaPredicted RBP17.25■□□□□ 0.35
UPF1-209ENST00000600310 TNFSF13O75888 250 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 FABP3P05413 133 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 PTNP21246 168 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 FUT4P22083 530 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 KIR2DL2P43627 348 aaPredicted RBP17.25■□□□□ 0.35
UPF1-209ENST00000600310 FLOT2Q14254 428 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 MFSD13AQ14CX5 517 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 TRAM2Q15035 370 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 PDK3Q15120 406 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 CDSNQ15517 529 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 PIWIL3Q7Z3Z3 882 aaKnown RBP17.25■□□□□ 0.35
UPF1-209ENST00000600310 PIGXQ8TBF5 258 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 CA5BP1Q8WTZ4 195 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 TMEM255BQ8WV15 326 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 TMEM239Q8WW34 195 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 SLC25A36Q96CQ1 311 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 SEPHS2Q99611 448 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 PIP5K1AQ99755 562 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 ANKRD19PQ9H560 264 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 BCO1Q9HAY6 547 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 KLHL9Q9P2J3 617 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 ING1Q9UK53 422 aaPredicted RBP17.25■□□□□ 0.35
UPF1-209ENST00000600310 CLEC4AQ9UMR7 237 aa17.25■□□□□ 0.35
UPF1-209ENST00000600310 RAMP1O60894 148 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 AKR7A3O95154 331 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 CLDN14O95500 239 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 PLGP00747 810 aaPredicted RBP17.24■□□□□ 0.35
UPF1-209ENST00000600310 IGF2P01344 180 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 BGLAPP02818 100 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 H1F0P07305 194 aaKnown RBP17.24■□□□□ 0.35
UPF1-209ENST00000600310 UGT2B15P54855 530 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 GABPB1Q06547 395 aaPredicted RBP17.24■□□□□ 0.35
UPF1-209ENST00000600310 LTBQ06643 244 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 RASGEF1BQ0VAM2 473 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 SLC25A35Q3KQZ1 300 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 OTUD3Q5T2D3 398 aaPredicted RBP17.24■□□□□ 0.35
UPF1-209ENST00000600310 FAM214BQ7L5A3 538 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 ZDHHC21Q8IVQ6 265 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 CCDC103Q8IW40 242 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 TMEM99Q8N816 258 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 RELL2Q8NC24 303 aaPredicted RBP17.24■□□□□ 0.35
UPF1-209ENST00000600310 DHRS1Q96LJ7 313 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 PSD2Q9BQI7 771 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 TACO1Q9BSH4 297 aaKnown RBP17.24■□□□□ 0.35
UPF1-209ENST00000600310 MEPEQ9NQ76 525 aaPredicted RBP17.24■□□□□ 0.35
UPF1-209ENST00000600310 KLHL13Q9P2N7 655 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 MED31Q9Y3C7 131 aa17.24■□□□□ 0.35
UPF1-209ENST00000600310 DOCK7Q96N67 2140 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 PTPN13Q12923 2485 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 IGKV3D-15A0A087WSY6 115 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 A0A1W2PRQ8 180 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 AQP7P3A6NL99 342 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 DIRAS1O95057 198 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 MT-ATP6P00846 226 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 MT-ND1P03886 318 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 UMPSP11172 480 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 BMP5P22003 454 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 GTF2E2P29084 291 aaKnown RBP17.23■□□□□ 0.35
UPF1-209ENST00000600310 MAGEA2P43356 314 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 P2RY4P51582 365 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 SLC16A1P53985 500 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 CTBP2P56545 445 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 CHRNB3Q05901 458 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 FOXD4Q12950 439 aaPredicted RBP17.23■□□□□ 0.35
UPF1-209ENST00000600310 DGCR6Q14129 220 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 ZNF74Q16587 644 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 FAM98BQ52LJ0 330 aaKnown RBP17.23■□□□□ 0.35
UPF1-209ENST00000600310 ADGRG5Q8IZF4 528 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 CNEP1R1Q8N9A8 125 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 STARD4Q96DR4 205 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 ZNF347Q96SE7 839 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms