RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 ABCA1O95477 2261 aa16.52■□□□□ 0.23
PNKP-213ENST00000599543 CR1P17927 2039 aa16.52■□□□□ 0.23
PNKP-213ENST00000599543 TMED7-TICAM2A0A0A6YYA0 188 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 SHISA9B4DS77 424 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 AP3D1O14617 1153 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 RAMP1O60894 148 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 ADAM11O75078 769 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 MRPL33O75394 65 aaKnown RBP16.51■□□□□ 0.23
PNKP-213ENST00000599543 PGM3O95394 542 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 TFPTP0C1Z6 253 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 IL7RP16871 459 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 POLR2HP52434 150 aaKnown RBP16.51■□□□□ 0.23
PNKP-213ENST00000599543 SLC16A1P53985 500 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 GCNT6Q5T4J0 391 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 LRRC74BQ6ZQY2 392 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 VRK2Q86Y07 508 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 ANKRD27Q96NW4 1050 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 TAS2R16Q9NYV7 291 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 TRAPPC4Q9Y296 219 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 TMED7Q9Y3B3 224 aa16.51■□□□□ 0.23
PNKP-213ENST00000599543 CHD3Q12873 2000 aaKnown RBP16.5■□□□□ 0.23
PNKP-213ENST00000599543 CFAP73A6NFT4 308 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 RNF223E7ERA6 249 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 ZNF208O43345 1280 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 EIF1BO60739 113 aaKnown RBP16.5■□□□□ 0.23
PNKP-213ENST00000599543 CCDC22O60826 627 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 SLC35A1P78382 337 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 CYLC2Q14093 348 aaPredicted RBP16.5■□□□□ 0.23
PNKP-213ENST00000599543 MAPRE2Q15555 327 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 TRMT5Q32P41 509 aaKnown RBP16.5■□□□□ 0.23
PNKP-213ENST00000599543 RABL3Q5HYI8 236 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 MRPL2Q5T653 305 aaKnown RBP16.5■□□□□ 0.23
PNKP-213ENST00000599543 KLHL17Q6TDP4 642 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 TMEM108Q6UXF1 575 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 CCDC103Q8IW40 242 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 PIAS4Q8N2W9 510 aaPredicted RBP16.5■□□□□ 0.23
PNKP-213ENST00000599543 OR52N5Q8NH56 324 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 TSPEARQ8WU66 669 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 PMM1Q92871 262 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 RADILQ96JH8 1075 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 HS6ST2Q96MM7 605 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 TRAF4Q9BUZ4 470 aaPredicted RBP16.5■□□□□ 0.23
PNKP-213ENST00000599543 RAD21L1Q9H4I0 556 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 MTHFD2LQ9H903 347 aaPredicted RBP16.5■□□□□ 0.23
PNKP-213ENST00000599543 A4GALTQ9NPC4 353 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 MALT1Q9UDY8 824 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 OSGIN1Q9UJX0 560 aa16.5■□□□□ 0.23
PNKP-213ENST00000599543 TMEM72A0PK05 275 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 EVPLLA8MZ36 301 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 FXYD1O00168 92 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 DBIP07108 87 aaKnown RBP16.49■□□□□ 0.23
PNKP-213ENST00000599543 COX4I1P13073 169 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 RPS4Y1P22090 263 aaKnown RBP16.49■□□□□ 0.23
PNKP-213ENST00000599543 PPIBP23284 216 aaKnown RBP16.49■□□□□ 0.23
PNKP-213ENST00000599543 TACR3P29371 465 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 AQP1P29972 269 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 ACVR1BP36896 505 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 SLC1A3P43003 542 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 MAP2K6P52564 334 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 FADDQ13158 208 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 CASP12Q6UXS9 341 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 PIGWQ7Z7B1 504 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 PEX5LQ8IYB4 626 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 CCT8L2Q96SF2 557 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 NAA11Q9BSU3 229 aaPredicted RBP16.49■□□□□ 0.23
PNKP-213ENST00000599543 MYLK2Q9H1R3 596 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 SLCO5A1Q9H2Y9 848 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 POU2F3Q9UKI9 436 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 USP22Q9UPT9 525 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 MGAT4BQ9UQ53 548 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 SLC9A8Q9Y2E8 581 aa16.49■□□□□ 0.23
PNKP-213ENST00000599543 ALPK2Q86TB3 2170 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 DNHD1Q96M86 4753 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 TMEM247A6NEH6 219 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 C5orf58C9J3I9 102 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 FAAHO00519 579 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 AIM2O14862 343 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 IGHV4-39P01824 125 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 ARAFP10398 606 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 BMP2P12643 396 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 GPX2P18283 190 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 ZNF83P51522 516 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 CRISP3P54108 245 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 H3F3AP84243 136 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 ADRM1Q16186 407 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 CYP51A1Q16850 503 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 AGAP6Q5VW22 663 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 OR7E24Q6IFN5 339 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 NANOGP8Q6NSW7 305 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 SLC22A25Q6T423 547 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 DTX2Q86UW9 622 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 PRIMA1Q86XR5 153 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 ZNF440Q8IYI8 595 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 MAPK1IP1LQ8NDC0 245 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 OR52P1PQ8NH57 321 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 LRRC58Q96CX6 371 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 GRIP2Q9C0E4 1043 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 NANOGQ9H9S0 305 aa16.48■□□□□ 0.23
PNKP-213ENST00000599543 BARX1Q9HBU1 254 aaPredicted RBP16.48■□□□□ 0.23
PNKP-213ENST00000599543 RLIMQ9NVW2 624 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms