RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 ZNF300Q96RE9 604 aaPredicted RBP10.58□□□□□ -0.72
LIG3-213ENST00000590630 KCTD14Q9BQ13 255 aaPredicted RBP10.58□□□□□ -0.72
LIG3-213ENST00000590630 ARL8BQ9NVJ2 186 aa10.58□□□□□ -0.72
LIG3-213ENST00000590630 ADPRHL2Q9NX46 363 aa10.58□□□□□ -0.72
LIG3-213ENST00000590630 CRIM1Q9NZV1 1036 aa10.58□□□□□ -0.72
LIG3-213ENST00000590630 SH3GLB1Q9Y371 365 aa10.58□□□□□ -0.72
LIG3-213ENST00000590630 POLQO75417 2590 aa10.58□□□□□ -0.72
LIG3-213ENST00000590630 TRAV36DV7A0A075B6V5 113 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 TRAPPC13A5PLN9 417 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 AQP7P3A6NL99 342 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 CPSF4LA6NMK7 179 aaKnown RBP10.57□□□□□ -0.72
LIG3-213ENST00000590630 ZNF814B7Z6K7 855 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 C16orf97H3BN30 126 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 CXCR6O00574 342 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 CHP2O43745 196 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 FZD7O75084 574 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 AKR7A3O95154 331 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 VAMP5O95183 116 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 RPS5P46782 204 aaKnown RBP10.57□□□□□ -0.72
LIG3-213ENST00000590630 OR3A2P47893 321 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 FAM27E3Q08E93 113 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 SNTB1Q13884 538 aaKnown RBP10.57□□□□□ -0.72
LIG3-213ENST00000590630 EXOC3L2Q2M3D2 409 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 ENTPD8Q5MY95 495 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 OTUD3Q5T2D3 398 aaPredicted RBP10.57□□□□□ -0.72
LIG3-213ENST00000590630 FAM69AQ5T7M9 428 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 NUFIP2Q7Z417 695 aaKnown RBP10.57□□□□□ -0.72
LIG3-213ENST00000590630 CARM1Q86X55 608 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 RBM45Q8IUH3 476 aaKnown RBP10.57□□□□□ -0.72
LIG3-213ENST00000590630 CCDC103Q8IW40 242 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 PGAM4Q8N0Y7 254 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 OR4D11Q8NGI4 311 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 RNF217Q8TC41 542 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 KTI12Q96EK9 354 aaPredicted RBP10.57□□□□□ -0.72
LIG3-213ENST00000590630 DACH2Q96NX9 599 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 EPYCQ99645 322 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 TMEM43Q9BTV4 400 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 PTDSS2Q9BVG9 487 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 SF3B5Q9BWJ5 86 aaKnown RBP10.57□□□□□ -0.72
LIG3-213ENST00000590630 POLR2J2Q9GZM3 115 aaKnown RBP10.57□□□□□ -0.72
LIG3-213ENST00000590630 POLR2J3Q9H1A7 115 aaKnown RBP10.57□□□□□ -0.72
LIG3-213ENST00000590630 ADA2Q9NZK5 511 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 GMPR2Q9P2T1 348 aaKnown RBP10.57□□□□□ -0.72
LIG3-213ENST00000590630 NDRG3Q9UGV2 375 aa10.57□□□□□ -0.72
LIG3-213ENST00000590630 SPG11Q96JI7 2443 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 PDZD2O15018 2839 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 IGKV1D-42A0A075B6H8 117 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 SH3D21A4FU49 640 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 CYSRT1A8MQ03 144 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 FTCDNL1E5RQL4 147 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 RAMP1O60894 148 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 GOSR1O95249 250 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 CNOT4O95628 575 aaKnown RBP10.56□□□□□ -0.72
LIG3-213ENST00000590630 EPXP11678 715 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 GTF2E2P29084 291 aaKnown RBP10.56□□□□□ -0.72
LIG3-213ENST00000590630 CCKARP32238 428 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 TLE4Q04727 773 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 SLC17A1Q14916 467 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 MFSD13AQ14CX5 517 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 SPATS1Q496A3 300 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 SAMD4BQ5PRF9 694 aaKnown RBP10.56□□□□□ -0.72
LIG3-213ENST00000590630 TMEM225Q6GV28 225 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 C16orf89Q6UX73 402 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 LINC00114Q6XXX2 140 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 GABRG1Q8N1C3 465 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 TMEM99Q8N816 258 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 OR6S1Q8NH40 331 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 BCAS4Q8TDM0 211 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 TPD52L3Q96J77 140 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 MPP4Q96JB8 637 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 MCCC2Q9HCC0 563 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 SLC7A7Q9UM01 511 aa10.56□□□□□ -0.72
LIG3-213ENST00000590630 NOSIPQ9Y314 301 aaKnown RBP10.56□□□□□ -0.72
LIG3-213ENST00000590630 GMNNO75496 209 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 OR5F1O95221 314 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 HSD17B1P14061 328 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 PPP3CBP16298 524 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 GGT1P19440 569 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 TNFRSF1BP20333 461 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 PSMB1P20618 241 aaKnown RBP10.55□□□□□ -0.72
LIG3-213ENST00000590630 OR1E2P47887 323 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 P2RY4P51582 365 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 TAS2R41P59536 307 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 MXRA7P84157 204 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 DAZAP2Q15038 168 aaPredicted RBP10.55□□□□□ -0.72
LIG3-213ENST00000590630 P2RY6Q15077 328 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 STAC2Q6ZMT1 411 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 DEF8Q6ZN54 512 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 Q6ZT83 130 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 CBLL1Q75N03 491 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 GPAT4Q86UL3 456 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 TSPYL5Q86VY4 417 aaPredicted RBP10.55□□□□□ -0.72
LIG3-213ENST00000590630 LSRQ86X29 649 aaPredicted RBP10.55□□□□□ -0.72
LIG3-213ENST00000590630 ZNF100Q8IYN0 542 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 OR9K2Q8NGE7 335 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 LINC01560Q8TB33 94 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 GEMIN6Q8WXD5 167 aaKnown RBP10.55□□□□□ -0.72
LIG3-213ENST00000590630 TAAR8Q969N4 342 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 FAM162AQ96A26 154 aa10.55□□□□□ -0.72
LIG3-213ENST00000590630 APH1AQ96BI3 265 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms