RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 K7ENP7 123 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 EFNA2O43921 213 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 MPZL2O60487 215 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 ZNF17P17021 662 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 GDF1P27539 372 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 ELK4P28324 431 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 FXYD6P3P58550 94 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 LTBQ06643 244 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 CDK5R2Q13319 367 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 ACSM5Q6NUN0 579 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 INO80CQ6PI98 192 aaPredicted RBP20.1■□□□□ 0.81
ATG4D-209ENST00000588857 IGFL2Q6UWQ7 119 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 MAMDC2Q7Z304 686 aaPredicted RBP20.1■□□□□ 0.81
ATG4D-209ENST00000588857 GALNTL5Q7Z4T8 443 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 TMEM178AQ8NBL3 297 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 OR14L1PQ8NHC6 308 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 CNIH3Q8TBE1 160 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 FBLIM1Q8WUP2 373 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 SLC25A43Q8WUT9 341 aaPredicted RBP20.1■□□□□ 0.81
ATG4D-209ENST00000588857 SLC25A36Q96CQ1 311 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 PIGQQ9BRB3 760 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 PTDSS2Q9BVG9 487 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 IFT27Q9BW83 186 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 POTEKPQ9BYX7 375 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 ADNPQ9H2P0 1102 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 UBQLN3Q9H347 655 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 TVP23BQ9NYZ1 205 aa20.1■□□□□ 0.81
ATG4D-209ENST00000588857 H3BML4 177 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 TRAPPC6AO75865 159 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 NDUFB2O95178 105 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 BGLAPP02818 100 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 RFPL3SP0C7P2 107 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 SLC6A6P31641 620 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 TNFSF10P50591 281 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 PRPS1P60891 318 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 FHL1Q13642 323 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 ANKDD1AQ495B1 522 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 SYT14P1Q58G82 188 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 ZNF766Q5HY98 468 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 C6orf141Q5SZD1 244 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 NANOGNBQ7Z5D8 188 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 OR6S1Q8NH40 331 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 RHOXF1Q8NHV9 184 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 TRUB1Q8WWH5 349 aaKnown RBP20.09■□□□□ 0.81
ATG4D-209ENST00000588857 DNAJA3Q96EY1 480 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 ZNF226Q9NYT6 803 aa20.09■□□□□ 0.81
ATG4D-209ENST00000588857 MRPS18CQ9Y3D5 142 aaKnown RBP20.09■□□□□ 0.81
ATG4D-209ENST00000588857 BLOC1S5-TXNDC5H3BN57 136 aa20.08■□□□□ 0.81
ATG4D-209ENST00000588857 HMGN1P05114 100 aa20.08■□□□□ 0.81
ATG4D-209ENST00000588857 ASAH2BP0C7U1 165 aa20.08■□□□□ 0.81
ATG4D-209ENST00000588857 PEPDP12955 493 aa20.08■□□□□ 0.81
ATG4D-209ENST00000588857 TMEM44Q2T9K0 475 aa20.08■□□□□ 0.81
ATG4D-209ENST00000588857 PGGHGQ32M88 737 aa20.08■□□□□ 0.81
ATG4D-209ENST00000588857 THSD4Q6ZMP0 1018 aa20.08■□□□□ 0.81
ATG4D-209ENST00000588857 OR4Q3Q8NH05 313 aa20.08■□□□□ 0.81
ATG4D-209ENST00000588857 HDAC2Q92769 488 aaKnown RBP20.08■□□□□ 0.81
ATG4D-209ENST00000588857 RELTQ969Z4 430 aa20.08■□□□□ 0.81
ATG4D-209ENST00000588857 SCMH1Q96GD3 660 aa20.08■□□□□ 0.81
ATG4D-209ENST00000588857 PLEKHA8Q96JA3 519 aa20.08■□□□□ 0.81
ATG4D-209ENST00000588857 UBL7Q96S82 380 aaPredicted RBP20.08■□□□□ 0.81
ATG4D-209ENST00000588857 YTHDF1Q9BYJ9 559 aaKnown RBP20.08■□□□□ 0.81
ATG4D-209ENST00000588857 NDEL1Q9GZM8 345 aa20.08■□□□□ 0.81
ATG4D-209ENST00000588857 ENKD1Q9H0I2 346 aa20.08■□□□□ 0.81
ATG4D-209ENST00000588857 OR2M5A3KFT3 312 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 M0R129 80 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 IDUAP35475 653 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 RPL4P36578 427 aaKnown RBP20.08■□□□□ 0.8
ATG4D-209ENST00000588857 PCYT1AP49585 367 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 CLK1P49759 484 aaKnown RBP20.08■□□□□ 0.8
ATG4D-209ENST00000588857 MEOX1P50221 254 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 RPS4XP62701 263 aaKnown RBP20.08■□□□□ 0.8
ATG4D-209ENST00000588857 PLGLB1Q02325 96 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 MFSD13AQ14CX5 517 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 SNAPC1Q16533 368 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 RBM48Q5RL73 367 aaKnown RBP20.08■□□□□ 0.8
ATG4D-209ENST00000588857 OR8J1Q8NGP2 316 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 MFSD8Q8NHS3 518 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 ARL5BQ96KC2 179 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 SMAD5Q99717 465 aaKnown RBP20.08■□□□□ 0.8
ATG4D-209ENST00000588857 ASPNQ9BXN1 380 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 TMEM185BQ9H7F4 350 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 AASSQ9UDR5 926 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 BAIAP2Q9UQB8 552 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 HIF3AQ9Y2N7 669 aa20.08■□□□□ 0.8
ATG4D-209ENST00000588857 SMNDC1O75940 238 aaKnown RBP eCLIP20.07■□□□□ 0.8
ATG4D-209ENST00000588857 GTF2E2P29084 291 aaKnown RBP20.07■□□□□ 0.8
ATG4D-209ENST00000588857 TOP3AQ13472 1001 aaPredicted RBP20.07■□□□□ 0.8
ATG4D-209ENST00000588857 GXYLT1Q4G148 440 aa20.07■□□□□ 0.8
ATG4D-209ENST00000588857 SLC6A19Q695T7 634 aa20.07■□□□□ 0.8
ATG4D-209ENST00000588857 YRDCQ86U90 279 aaKnown RBP20.07■□□□□ 0.8
ATG4D-209ENST00000588857 LNX2Q8N448 690 aa20.07■□□□□ 0.8
ATG4D-209ENST00000588857 TCEANCQ8N8B7 351 aa20.07■□□□□ 0.8
ATG4D-209ENST00000588857 FAM83FQ8NEG4 500 aaPredicted RBP20.07■□□□□ 0.8
ATG4D-209ENST00000588857 TM9SF4Q92544 642 aa20.07■□□□□ 0.8
ATG4D-209ENST00000588857 IL4I1Q96RQ9 567 aa20.07■□□□□ 0.8
ATG4D-209ENST00000588857 TAPBPLQ9BX59 468 aa20.07■□□□□ 0.8
ATG4D-209ENST00000588857 POLDIP3Q9BY77 421 aaKnown RBP20.07■□□□□ 0.8
ATG4D-209ENST00000588857 TTTY12Q9BZ98 90 aa20.07■□□□□ 0.8
ATG4D-209ENST00000588857 OR2B2Q9GZK3 357 aa20.07■□□□□ 0.8
ATG4D-209ENST00000588857 NBEAQ8NFP9 2946 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms