RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 TFAP2EQ6VUC0 442 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 LINC00696Q6ZRV3 163 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 ZNF621Q6ZSS3 439 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 IKBIPQ70UQ0 350 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 HSD17B13Q7Z5P4 300 aaPredicted RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 MRGPREQ86SM8 312 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 C17orf82Q86X59 251 aaPredicted RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 CLECL1Q8IZS7 167 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 LINC00518Q8N0U6 118 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 EIF4E3Q8N5X7 224 aaKnown RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 ZNF655Q8N720 491 aaPredicted RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 ARIH2OSQ8N7S6 290 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 UXS1Q8NBZ7 420 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SRFBP1Q8NEF9 429 aaKnown RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 TMIEQ8NEW7 156 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 TTLQ8NG68 377 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 OR7D4Q8NG98 312 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 OR11H7Q8NGC8 314 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 OR52H1Q8NGJ2 320 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 OR52I1Q8NGK6 324 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 OR5M3Q8NGP4 307 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 OR2A12Q8NGT7 310 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 OR2T4Q8NH00 348 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 OR52N1Q8NH53 320 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 HUS1BQ8NHY5 278 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.81□□□□□ -1.8
LIG3-211ENST00000588713 LKAAEAR1Q8TD35 194 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 CXorf40AQ8TE69 158 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 ST8SIA4Q92187 359 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 MTERF3Q96E29 417 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 PERPQ96FX8 193 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 APIPQ96GX9 242 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 FER1L6-AS2Q96M78 137 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 FRG2BQ96QU4 278 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 RBP7Q96R05 134 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 DPH2Q9BQC3 489 aaPredicted RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 PELOQ9BRX2 385 aaKnown RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 APOOQ9BUR5 198 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 DUSP26Q9BV47 211 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 TMPRSS13Q9BYE2 586 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 ACTR6Q9GZN1 396 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 OSGEPL1Q9H4B0 414 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 ACER3Q9NUN7 267 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 TMEM184CQ9NVA4 438 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 DNAJC11Q9NVH1 559 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 RLIMQ9NVW2 624 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 ASB6Q9NWX5 421 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SLCO1C1Q9NYB5 712 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 DNAJC27Q9NZQ0 273 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 DUX4Q9UBX2 424 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 REV1Q9UBZ9 1251 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 TESQ9UGI8 421 aaKnown RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 ACAD8Q9UKU7 415 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 BAIAP2Q9UQB8 552 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SF3B6Q9Y3B4 125 aaKnown RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 ACTL7AQ9Y615 435 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 SPIN1Q9Y657 262 aaPredicted RBP3.81□□□□□ -1.8
LIG3-211ENST00000588713 CACNG2Q9Y698 323 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 CLCA3PQ9Y6N3 262 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 TRPM6Q9BX84 2022 aa3.81□□□□□ -1.8
LIG3-211ENST00000588713 ANKRD12Q6UB98 2062 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 LRP4O75096 1905 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 HYDINQ4G0P3 5121 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 ZANQ9Y493 2812 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 LOC102723532A0A0G2JNH3 316 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 TRBC2A0A5B9 178 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 TMEM202A6NGA9 273 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 A6NNC1 897 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 A8MXK9 166 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 ANKRD66B4E2M5 251 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 FAM227AF5H4B4 570 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SMLR1H3BR10 107 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 TGFBR3LH3BV60 316 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 K7ERQ8 282 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 PEX12O00623 359 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 ABCD4O14678 606 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 TSPAN4O14817 238 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 CASKO14936 926 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 KDELR3O43731 214 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 ACSL4O60488 711 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 PLOD3O60568 738 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 HPGDSO60760 199 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 PTP4A3O75365 173 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 PEX14O75381 377 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 PSIP1O75475 530 aaKnown RBP3.8□□□□□ -1.8
LIG3-211ENST00000588713 GCM2O75603 506 aaPredicted RBP3.8□□□□□ -1.8
LIG3-211ENST00000588713 LRATO95237 230 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 CNOT4O95628 575 aaKnown RBP3.8□□□□□ -1.8
LIG3-211ENST00000588713 CPSF4O95639 269 aaKnown RBP3.8□□□□□ -1.8
LIG3-211ENST00000588713 LATS1O95835 1130 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 GUCA1CO95843 209 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 B3GALT4O96024 378 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 OPN1SWP03999 348 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 HLA-DPB1P04440 258 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 HMGN1P05114 100 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 GIPP09681 153 aaPredicted RBP3.8□□□□□ -1.8
LIG3-211ENST00000588713 CLEC2LP0C7M8 214 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 FGF5P12034 268 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 ZNF250P15622 560 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms