RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 NOP53Q9NZM5 478 aaKnown RBP10.15□□□□□ -0.78
LIG3-207ENST00000586119 SLC35A3Q9Y2D2 325 aa10.15□□□□□ -0.78
LIG3-207ENST00000586119 NBEAL1Q6ZS30 2694 aa10.15□□□□□ -0.78
LIG3-207ENST00000586119 IGHV1-18A0A0C4DH31 117 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 IGHV4-61A0A0C4DH41 118 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 HMGN4O00479 90 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 NR5A2O00482 541 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 ANKRD28O15084 1053 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 CHRM4P08173 479 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 TUBA1BP68363 451 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 TUBA4AP68366 448 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 BNIP2Q12982 314 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 CEACAM7Q14002 265 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 CARTPTQ16568 116 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 SPANXN4Q5MJ08 99 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 FAM120AOSQ5T036 256 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 OR7E24Q6IFN5 339 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 TUBA1AQ71U36 451 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 LINGO2Q7L985 606 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 MAVSQ7Z434 540 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 AURKBQ96GD4 344 aaPredicted RBP10.14□□□□□ -0.79
LIG3-207ENST00000586119 TEX37Q96LM6 180 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 DPY30Q9C005 99 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 SEC61A2Q9H9S3 476 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 FGFR1OP2Q9NVK5 253 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 RLIMQ9NVW2 624 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 PCDHGB4Q9UN71 923 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 TRAPPC4Q9Y296 219 aa10.14□□□□□ -0.79
LIG3-207ENST00000586119 SPIN1Q9Y657 262 aaPredicted RBP10.14□□□□□ -0.79
LIG3-207ENST00000586119 LOC100289279A0A1B0GTE1 492 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 PRSS51A0A1B0GVH4 220 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 GMNCA6NCL1 334 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 POLR3GO15318 223 aaPredicted RBP10.13□□□□□ -0.79
LIG3-207ENST00000586119 GKN3PP0CG01 181 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 EPHA3P29320 983 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 MPGP29372 298 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 IL12AP29459 219 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 LSP1P33241 339 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 CDKN2CP42773 168 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 NR4A2P43354 598 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 IDH3AP50213 366 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 AQP5P55064 265 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 PRPS1P60891 318 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 GNGT1P63211 74 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 SLC35A1P78382 337 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 CHRNB3Q05901 458 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 MAPK11Q15759 364 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 COX20Q5RI15 118 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 OTUD3Q5T2D3 398 aaPredicted RBP10.13□□□□□ -0.79
LIG3-207ENST00000586119 ATAD3BQ5T9A4 648 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 VHLLQ6RSH7 139 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 SSX8Q7RTT4 187 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 AAED1Q7RTV5 226 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 RNF130Q86XS8 419 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 ZCCHC24Q8N2G6 241 aaKnown RBP10.13□□□□□ -0.79
LIG3-207ENST00000586119 OR8J2Q8NGG1 315 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 NEURL3Q96EH8 262 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 C1orf159Q96HA4 380 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 VRK1Q99986 396 aaPredicted RBP10.13□□□□□ -0.79
LIG3-207ENST00000586119 SLC35A5Q9BS91 424 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 NAA11Q9BSU3 229 aaPredicted RBP10.13□□□□□ -0.79
LIG3-207ENST00000586119 NSRP1Q9H0G5 558 aaKnown RBP10.13□□□□□ -0.79
LIG3-207ENST00000586119 SLC38A1Q9H2H9 487 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 WDR55Q9H6Y2 383 aaPredicted RBP10.13□□□□□ -0.79
LIG3-207ENST00000586119 FKRPQ9H9S5 495 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 TCF7L2Q9NQB0 619 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 EXOSC3Q9NQT5 275 aaKnown RBP10.13□□□□□ -0.79
LIG3-207ENST00000586119 DCTN4Q9UJW0 460 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 AMDHD2Q9Y303 409 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 PMF1-BGLAPU3KQ54 211 aa10.13□□□□□ -0.79
LIG3-207ENST00000586119 LRP5LA4QPB2 252 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 AGAP5A6NIR3 686 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 UPK3AO75631 287 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 LGI1O95970 557 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 GSNP06396 782 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 GUSBP08236 651 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 SRD5A1P18405 259 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 CALCRP30988 508 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 CHI3L1P36222 383 aaPredicted RBP10.12□□□□□ -0.79
LIG3-207ENST00000586119 CLK1P49759 484 aaKnown RBP10.12□□□□□ -0.79
LIG3-207ENST00000586119 SELENOPP49908 381 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 PDLIM4P50479 330 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 P2RY4P51582 365 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 POLR2HP52434 150 aaKnown RBP10.12□□□□□ -0.79
LIG3-207ENST00000586119 UFM1P61960 85 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 GABPB1Q06547 395 aaPredicted RBP10.12□□□□□ -0.79
LIG3-207ENST00000586119 OR7A5Q15622 319 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 GSTA3Q16772 222 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 SLC9B1Q4ZJI4 515 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 METTL21CQ5VZV1 264 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 NXNQ6DKJ4 435 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 KDM8Q8N371 416 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 OR9K2Q8NGE7 335 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 PNPT1Q8TCS8 783 aaKnown RBP10.12□□□□□ -0.79
LIG3-207ENST00000586119 DDIT4LQ96D03 193 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 ADAM19Q9H013 955 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 NPHS2Q9NP85 383 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 POLE3Q9NRF9 147 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 MRGBPQ9NV56 204 aa10.12□□□□□ -0.79
LIG3-207ENST00000586119 TMEM45AQ9NWC5 275 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms