RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TGFBR1P36897 503 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 MAP2K6P52564 334 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 PCOLCEQ15113 449 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 PON3Q15166 354 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 TOMM34Q15785 309 aaPredicted RBP12.89□□□□□ -0.35
LIG3-205ENST00000585941 COL28A1Q2UY09 1125 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 FCRLBQ6BAA4 426 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 CYB561A3Q8NBI2 242 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 SDR9C7Q8NEX9 313 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 TM9SF4Q92544 642 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 TAAR8Q969N4 342 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 C8orf44Q96CB5 159 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 MRPL48Q96GC5 212 aaKnown RBP12.89□□□□□ -0.35
LIG3-205ENST00000585941 MOGAT1Q96PD6 335 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 ALG8Q9BVK2 526 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 ASPNQ9BXN1 380 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 ADGRL4Q9HBW9 690 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 GSTK1Q9Y2Q3 226 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 NOX1Q9Y5S8 564 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 IGHV1-45A0A0A0MS14 117 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.89□□□□□ -0.35
LIG3-205ENST00000585941 ADAM10O14672 748 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 OR2T1O43869 369 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 SUSD5O60279 629 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 GDF9O60383 454 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 KLF7O75840 302 aaPredicted RBP12.89□□□□□ -0.35
LIG3-205ENST00000585941 BGLAPP02818 100 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 MT-ND5P03915 603 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 GAAP10253 952 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 CD53P19397 219 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 SDHAP31040 664 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 FGF9P31371 208 aaPredicted RBP12.89□□□□□ -0.35
LIG3-205ENST00000585941 AQP2P41181 271 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 FOLR3P41439 243 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 SLC25A1P53007 311 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 TAS2R43P59537 309 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 ERVK-25P63136 954 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 BTBD16Q32M84 506 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 FAM69AQ5T7M9 428 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 FAM199XQ6PEV8 388 aaPredicted RBP12.89□□□□□ -0.35
LIG3-205ENST00000585941 TUBA3EQ6PEY2 450 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 C16orf87Q6PH81 154 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 CD200R1LQ6Q8B3 271 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 IGFN1Q86VF2 1251 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 JAZF1Q86VZ6 243 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 LRRC75AQ8NAA5 344 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 NPEPL1Q8NDH3 523 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 OR10H4Q8NGA5 316 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 MOSPD2Q8NHP6 518 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 M1APQ8TC57 530 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 SPRYD4Q8WW59 207 aaPredicted RBP12.89□□□□□ -0.35
LIG3-205ENST00000585941 MESP1Q9BRJ9 268 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 NMNAT2Q9BZQ4 307 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 AKIRIN1Q9H9L7 192 aaPredicted RBP12.89□□□□□ -0.35
LIG3-205ENST00000585941 TRIM36Q9NQ86 728 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 ASB6Q9NWX5 421 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 BABAM2Q9NXR7 383 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 SF3B6Q9Y3B4 125 aaKnown RBP12.89□□□□□ -0.35
LIG3-205ENST00000585941 ADAM18Q9Y3Q7 739 aa12.89□□□□□ -0.35
LIG3-205ENST00000585941 IGLV3-32A0A0A0MS00 114 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 A0A1W2PQ72 361 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 TP53I11O14683 189 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 PLD2O14939 933 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 NPIPB7O75200 414 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 AHSA1O95433 338 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 IL1AP01583 271 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 HLA-DPB1P04440 258 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 UMODP07911 640 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 OR2T7P0C7T2 308 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 CD59P13987 128 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 S100A5P33763 92 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 APOBEC1P41238 236 aaKnown RBP12.88□□□□□ -0.35
LIG3-205ENST00000585941 RPS5P46782 204 aaKnown RBP12.88□□□□□ -0.35
LIG3-205ENST00000585941 DIO1P49895 249 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 CTXN1P60606 82 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 LTBQ06643 244 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 MFSD13AQ14CX5 517 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 NTRK2Q16620 822 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 ZNF791Q3KP31 576 aaPredicted RBP12.88□□□□□ -0.35
LIG3-205ENST00000585941 SOWAHCQ53LP3 525 aaPredicted RBP12.88□□□□□ -0.35
LIG3-205ENST00000585941 C16orf47Q6ZP98 133 aaPredicted RBP12.88□□□□□ -0.35
LIG3-205ENST00000585941 FAM122BQ7Z309 247 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 ZBTB46Q86UZ6 589 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 ADGRG3Q86Y34 549 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 NAXDQ8IW45 347 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 DND1Q8IYX4 353 aaKnown RBP12.88□□□□□ -0.35
LIG3-205ENST00000585941 TMEM99Q8N816 258 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 GALNT6Q8NCL4 622 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 OR2T27Q8NH04 317 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 SMPDL3BQ92485 455 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 ZNF524Q96C55 264 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 C1GALT1C1Q96EU7 318 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 IMMP1LQ96LU5 166 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 KCTD7Q96MP8 289 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 TAAR9Q96RI9 348 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 CNN2Q99439 309 aaKnown RBP12.88□□□□□ -0.35
LIG3-205ENST00000585941 DDOQ99489 341 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 CDC6Q99741 560 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 MED18Q9BUE0 208 aa12.88□□□□□ -0.35
LIG3-205ENST00000585941 DDA1Q9BW61 102 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms