RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 POLR3GO15318 223 aaPredicted RBP17.98■□□□□ 0.47
SHMT1-209ENST00000582653 FRS3O43559 492 aa17.98■□□□□ 0.47
SHMT1-209ENST00000582653 NDUFS7O75251 213 aa17.98■□□□□ 0.47
SHMT1-209ENST00000582653 IGHV4-39P01824 125 aa17.98■□□□□ 0.47
SHMT1-209ENST00000582653 GPIP06744 558 aa17.98■□□□□ 0.47
SHMT1-209ENST00000582653 NCF2P19878 526 aaPredicted RBP17.98■□□□□ 0.47
SHMT1-209ENST00000582653 STX1BP61266 288 aa17.98■□□□□ 0.47
SHMT1-209ENST00000582653 COPZ1P61923 177 aa17.98■□□□□ 0.47
SHMT1-209ENST00000582653 SPOCK1Q08629 439 aa17.98■□□□□ 0.47
SHMT1-209ENST00000582653 ZNF311Q5JNZ3 666 aa17.98■□□□□ 0.47
SHMT1-209ENST00000582653 AGAP6Q5VW22 663 aa17.98■□□□□ 0.47
SHMT1-209ENST00000582653 PIAS4Q8N2W9 510 aaPredicted RBP17.98■□□□□ 0.47
SHMT1-209ENST00000582653 ZIC4Q8N9L1 334 aa17.98■□□□□ 0.47
SHMT1-209ENST00000582653 MAPK1IP1LQ8NDC0 245 aa17.98■□□□□ 0.47
SHMT1-209ENST00000582653 ZNF385AQ96PM9 386 aaKnown RBP17.98■□□□□ 0.47
SHMT1-209ENST00000582653 RSPO3Q9BXY4 272 aaPredicted RBP17.98■□□□□ 0.47
SHMT1-209ENST00000582653 BARX1Q9HBU1 254 aaPredicted RBP17.98■□□□□ 0.47
SHMT1-209ENST00000582653 THUMPD1Q9NXG2 353 aaKnown RBP17.98■□□□□ 0.47
SHMT1-209ENST00000582653 UPB1Q9UBR1 384 aa17.98■□□□□ 0.47
SHMT1-209ENST00000582653 ADAM21Q9UKJ8 722 aa17.98■□□□□ 0.47
SHMT1-209ENST00000582653 B3GALT5Q9Y2C3 310 aa17.98■□□□□ 0.47
SHMT1-209ENST00000582653 DNHD1Q96M86 4753 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 PDLIM1O00151 329 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 CRLF1O75462 422 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 CDH11P55287 796 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 TTMPQ5BVD1 217 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 KLHL17Q6TDP4 642 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 MSRB3Q8IXL7 192 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 C10orf111Q8N326 155 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 WDR31Q8NA23 367 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 ATP6V1G3Q96LB4 118 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 HS6ST2Q96MM7 605 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 MDFIQ99750 246 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 A4GALTQ9NPC4 353 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 ADPRHL2Q9NX46 363 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 CCDC167Q9P0B6 97 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 GDF2Q9UK05 429 aaPredicted RBP17.97■□□□□ 0.47
SHMT1-209ENST00000582653 IFT52Q9Y366 437 aa17.97■□□□□ 0.47
SHMT1-209ENST00000582653 ANK3Q12955 4377 aaKnown RBP17.97■□□□□ 0.47
SHMT1-209ENST00000582653 CADP27708 2225 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 TLN2Q9Y4G6 2542 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 A0A096LPI6 279 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 A8MVM7 634 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 E7EQL1 145 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 M0R1B8 84 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 NR5A2O00482 541 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 TGDSO95455 350 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 CD40P25942 277 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 TTKP33981 857 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 MRPL19P49406 292 aaKnown RBP17.96■□□□□ 0.47
SHMT1-209ENST00000582653 AQP5P55064 265 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 NRF1Q16656 503 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 PAGE3Q5JUK9 113 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 TMEM225Q6GV28 225 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 BLOC1S3Q6QNY0 202 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 AAED1Q7RTV5 226 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 GPAT4Q86UL3 456 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 GOLGA6L1Q8N7Z2 621 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 OR9K2Q8NGE7 335 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 C3orf49Q96BT1 292 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 DHRS9Q9BPW9 319 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 TAPBPLQ9BX59 468 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 CACYBPQ9HB71 228 aaKnown RBP17.96■□□□□ 0.47
SHMT1-209ENST00000582653 BCL2L10Q9HD36 194 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 SLC52A3Q9NQ40 469 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 JMJD1CQ15652 2540 aa17.96■□□□□ 0.47
SHMT1-209ENST00000582653 AQP7P3A6NL99 342 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 BMP2P12643 396 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 P2RY4P51582 365 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 SLC25A3Q00325 362 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 FADDQ13158 208 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 ZSWIM7Q19AV6 140 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 LRIF1Q5T3J3 769 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 C1QTNF12Q5T7M4 302 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 C1orf140Q5VVS0 124 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 SLC22A25Q6T423 547 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 DEPDC4Q8N2C3 294 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 BBS10Q8TAM1 723 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 TMEM45BQ96B21 275 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 SPDL1Q96EA4 605 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 CCDC28BQ9BUN5 200 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 SF3B5Q9BWJ5 86 aaKnown RBP17.95■□□□□ 0.46
SHMT1-209ENST00000582653 AMBRA1Q9C0C7 1298 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 RAD21L1Q9H4I0 556 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 ARMC7Q9H6L4 198 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 CBLN4Q9NTU7 201 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 DCTN4Q9UJW0 460 aa17.95■□□□□ 0.46
SHMT1-209ENST00000582653 TMEM229AB2RXF0 380 aa17.94■□□□□ 0.46
SHMT1-209ENST00000582653 C5orf58C9J3I9 102 aa17.94■□□□□ 0.46
SHMT1-209ENST00000582653 NPIPB7O75200 414 aa17.94■□□□□ 0.46
SHMT1-209ENST00000582653 TP53P04637 393 aaPredicted RBP17.94■□□□□ 0.46
SHMT1-209ENST00000582653 CDH2P19022 906 aaPredicted RBP17.94■□□□□ 0.46
SHMT1-209ENST00000582653 DMTNQ08495 405 aa17.94■□□□□ 0.46
SHMT1-209ENST00000582653 COMTD1Q86VU5 262 aa17.94■□□□□ 0.46
SHMT1-209ENST00000582653 NFKBIDQ8NI38 313 aa17.94■□□□□ 0.46
SHMT1-209ENST00000582653 ADAD1Q96M93 576 aaKnown RBP17.94■□□□□ 0.46
SHMT1-209ENST00000582653 RHNO1Q9BSD3 238 aa17.94■□□□□ 0.46
SHMT1-209ENST00000582653 SLC17A5Q9NRA2 495 aa17.94■□□□□ 0.46
SHMT1-209ENST00000582653 VAPAQ9P0L0 249 aa17.94■□□□□ 0.46
SHMT1-209ENST00000582653 POU2F3Q9UKI9 436 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms