RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CDK5R2Q13319 367 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 NDUFAF6Q330K2 333 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 AAED1Q7RTV5 226 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 TMCO5AQ8N6Q1 288 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 CDRT4Q8N9R6 151 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 RFWD2Q8NHY2 731 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 DNAJA3Q96EY1 480 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 GLIPR2Q9H4G4 154 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 BRF2Q9HAW0 419 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 IL20RAQ9UHF4 553 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 RPUSD1Q9UJJ7 312 aaKnown RBP13.61□□□□□ -0.23
VPS53-218ENST00000575207 FZR1Q9UM11 496 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 HDGFL3Q9Y3E1 203 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 NOX1Q9Y5S8 564 aa13.61□□□□□ -0.23
VPS53-218ENST00000575207 ZNF816-ZNF321PA0A0X1KG74 233 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 ZNF503-AS2A6NEH8 195 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 PCDH7O60245 1069 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 HSPA4LO95757 839 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 PDYNP01213 254 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 PRPS2P11908 318 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 SERPINB4P48594 390 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 CCR4P51679 360 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 RPS23P62266 143 aaKnown RBP13.6□□□□□ -0.23
VPS53-218ENST00000575207 BST1Q10588 318 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 DLG1Q12959 904 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 CBFBQ13951 182 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 ZKSCAN8Q15776 578 aaPredicted RBP13.6□□□□□ -0.23
VPS53-218ENST00000575207 NKPD1Q17RQ9 610 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 PRSS53Q2L4Q9 553 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 CCNJQ5T5M9 372 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 CAVIN1Q6NZI2 390 aaKnown RBP13.6□□□□□ -0.23
VPS53-218ENST00000575207 PGBD2Q6P3X8 592 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 TMEM154Q6P9G4 183 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 C1orf174Q8IYL3 243 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 ST8SIA1Q92185 356 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 AMDHD1Q96NU7 426 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 DIRC2Q96SL1 478 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 TOR3AQ9H497 397 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 GRHL1Q9NZI5 618 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 RNF14Q9UBS8 474 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 NFU1Q9UMS0 254 aa13.6□□□□□ -0.23
VPS53-218ENST00000575207 TNPO3Q9Y5L0 923 aaKnown RBP13.6□□□□□ -0.23
VPS53-218ENST00000575207 KIAA1109Q2LD37 5005 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 TMEM229AB2RXF0 380 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 GOLGA6L22H0YM25 854 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 MGRN1O60291 552 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 DNAJA2O60884 412 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 BCKDHAP12694 445 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 NTSP30990 170 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 SH3BGRP55822 239 aaPredicted RBP13.59□□□□□ -0.23
VPS53-218ENST00000575207 SEC61A1P61619 476 aaKnown RBP13.59□□□□□ -0.23
VPS53-218ENST00000575207 PAX2Q02962 417 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 MERTKQ12866 999 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 LARS2Q15031 903 aaKnown RBP13.59□□□□□ -0.23
VPS53-218ENST00000575207 ALKBH6Q3KRA9 238 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 LRRN1Q6UXK5 716 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 LRIG3Q6UXM1 1119 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 GDPGP1Q6ZNW5 385 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 MEPCEQ7L2J0 689 aaKnown RBP13.59□□□□□ -0.23
VPS53-218ENST00000575207 LINGO2Q7L985 606 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 C16orf78Q8WTQ4 265 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 SELENOMQ8WWX9 145 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 ZNF385AQ96PM9 386 aaKnown RBP13.59□□□□□ -0.23
VPS53-218ENST00000575207 PATZ1Q9HBE1 687 aaKnown RBP13.59□□□□□ -0.23
VPS53-218ENST00000575207 VPS29Q9UBQ0 182 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 GPR160Q9UJ42 338 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 GRID1Q9ULK0 1009 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 TRAPPC4Q9Y296 219 aa13.59□□□□□ -0.23
VPS53-218ENST00000575207 SPIN1Q9Y657 262 aaPredicted RBP13.59□□□□□ -0.23
VPS53-218ENST00000575207 A0A096LPK6 155 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 EIF1BO60739 113 aaKnown RBP13.58□□□□□ -0.24
VPS53-218ENST00000575207 ACP2P11117 423 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 DDCP20711 480 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 SESN3P58005 492 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 OR2B6P58173 313 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 SLC3A1Q07837 685 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 TRAF3Q13114 568 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 DUSP5Q16690 384 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 GGTA1PQ4G0N0 100 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 METTL2BQ6P1Q9 378 aaKnown RBP13.58□□□□□ -0.24
VPS53-218ENST00000575207 RAPH1Q70E73 1250 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 MDP1Q86V88 176 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 ZBED8Q8IZ13 594 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 POU5F2Q8N7G0 328 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 WFDC9Q8NEX5 89 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 CCL17Q92583 94 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 ELMOD3Q96FG2 381 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 ALKBH3Q96Q83 286 aaPredicted RBP13.58□□□□□ -0.24
VPS53-218ENST00000575207 GPR22Q99680 433 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 TAAR3PQ9P1P4 343 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 OR5V1Q9UGF6 321 aa13.58□□□□□ -0.24
VPS53-218ENST00000575207 FAM187AA6NFU0 413 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 POC1B-GALNT4F8VUJ3 575 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 EIF4E2O60573 245 aaKnown RBP13.57□□□□□ -0.24
VPS53-218ENST00000575207 PIAS1O75925 651 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 RSL1D1O76021 490 aaKnown RBP13.57□□□□□ -0.24
VPS53-218ENST00000575207 IGLL1P15814 213 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 CLK1P49759 484 aaKnown RBP13.57□□□□□ -0.24
VPS53-218ENST00000575207 KRTAP10-11P60412 298 aa13.57□□□□□ -0.24
VPS53-218ENST00000575207 RAE1P78406 368 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms