RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 OR52P1PQ8NH57 321 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 SLC25A43Q8WUT9 341 aaPredicted RBP6.6□□□□□ -1.35
NUP88-205ENST00000572809 SLC38A5Q8WUX1 472 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 WDR60Q8WVS4 1066 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 GTF2H4Q92759 462 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 MBD6Q96DN6 1003 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 AURKBQ96GD4 344 aaPredicted RBP6.6□□□□□ -1.35
NUP88-205ENST00000572809 ARL5BQ96KC2 179 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 ALPK1Q96QP1 1244 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 PSD2Q9BQI7 771 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 EBF4Q9BQW3 602 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 TACO1Q9BSH4 297 aaKnown RBP6.6□□□□□ -1.35
NUP88-205ENST00000572809 PAIP1Q9H074 479 aaKnown RBP6.6□□□□□ -1.35
NUP88-205ENST00000572809 OR10A4Q9H209 315 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 VIPAS39Q9H9C1 493 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 BCO1Q9HAY6 547 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 KLHL9Q9P2J3 617 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 P2RX2Q9UBL9 471 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 CHRNA9Q9UGM1 479 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 HDGFL3Q9Y3E1 203 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 HEATR5AQ86XA9 2040 aa6.6□□□□□ -1.35
NUP88-205ENST00000572809 TMED7-TICAM2A0A0A6YYA0 188 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 ZNF724A8MTY0 619 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 KRTAP9-7A8MTY7 169 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 ZNF814B7Z6K7 855 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 FAAHO00519 579 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 AP3D1O14617 1153 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 SMAD9O15198 467 aaKnown RBP6.59□□□□□ -1.35
NUP88-205ENST00000572809 GCM2O75603 506 aaPredicted RBP6.59□□□□□ -1.35
NUP88-205ENST00000572809 PMS2P2O95744 297 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 ADAP00813 363 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 BCHEP06276 602 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 CD99P14209 185 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 UQCRBP14927 111 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 CD53P19397 219 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 KLK2P20151 261 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 CCNA2P20248 432 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 RPS4Y1P22090 263 aaKnown RBP6.59□□□□□ -1.35
NUP88-205ENST00000572809 TACR3P29371 465 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 SLC1A3P43003 542 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 OR3A2P47893 321 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 POLR2HP52434 150 aaKnown RBP6.59□□□□□ -1.35
NUP88-205ENST00000572809 MAP2K6P52564 334 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 OR2B6P58173 313 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 IRX1P78414 480 aaPredicted RBP6.59□□□□□ -1.35
NUP88-205ENST00000572809 EPS8Q12929 822 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 ITGADQ13349 1161 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 LARS2Q15031 903 aaKnown RBP6.59□□□□□ -1.35
NUP88-205ENST00000572809 PDK3Q15120 406 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 ZSWIM7Q19AV6 140 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 BEX5Q5H9J7 111 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 MRPL2Q5T653 305 aaKnown RBP6.59□□□□□ -1.35
NUP88-205ENST00000572809 SLC2A7Q6PXP3 512 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 TFAP2EQ6VUC0 442 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 CXorf67Q86X51 503 aaPredicted RBP6.59□□□□□ -1.35
NUP88-205ENST00000572809 VRK2Q86Y07 508 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 ZNF440Q8IYI8 595 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 GABRG1Q8N1C3 465 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 STEAP2Q8NFT2 490 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 CKAP2Q8WWK9 683 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 PIGTQ969N2 578 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 DDIT4LQ96D03 193 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 SPDL1Q96EA4 605 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 ZHX1-C8orf76Q96EF9 292 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 DNAJA3Q96EY1 480 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 MAGEB18Q96M61 343 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 ZNF300Q96RE9 604 aaPredicted RBP6.59□□□□□ -1.35
NUP88-205ENST00000572809 OR11A1Q9GZK7 315 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 ACTR6Q9GZN1 396 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 RAD21L1Q9H4I0 556 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 ARMC7Q9H6L4 198 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 AP5S1Q9NUS5 200 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 RLIMQ9NVW2 624 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 TMEM45AQ9NWC5 275 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 CCDC167Q9P0B6 97 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 SLAMF8Q9P0V8 285 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 TMEM181Q9P2C4 612 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 TMEFF2Q9UIK5 374 aaPredicted RBP6.59□□□□□ -1.35
NUP88-205ENST00000572809 OSGIN1Q9UJX0 560 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 ING1Q9UK53 422 aaPredicted RBP6.59□□□□□ -1.35
NUP88-205ENST00000572809 TRAPPC4Q9Y296 219 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 IFT52Q9Y366 437 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 TMED7Q9Y3B3 224 aa6.59□□□□□ -1.35
NUP88-205ENST00000572809 PRRC2AP48634 2157 aaKnown RBP6.58□□□□□ -1.36
NUP88-205ENST00000572809 DSPPQ9NZW4 1301 aa6.58□□□□□ -1.36
NUP88-205ENST00000572809 A0A096LPI6 279 aa6.58□□□□□ -1.36
NUP88-205ENST00000572809 TMEM72A0PK05 275 aa6.58□□□□□ -1.36
NUP88-205ENST00000572809 CDHR4A6H8M9 788 aa6.58□□□□□ -1.36
NUP88-205ENST00000572809 ZNF208O43345 1280 aa6.58□□□□□ -1.36
NUP88-205ENST00000572809 DNPH1O43598 174 aa6.58□□□□□ -1.36
NUP88-205ENST00000572809 EIF1BO60739 113 aaKnown RBP6.58□□□□□ -1.36
NUP88-205ENST00000572809 FESP07332 822 aa6.58□□□□□ -1.36
NUP88-205ENST00000572809 GKN3PP0CG01 181 aa6.58□□□□□ -1.36
NUP88-205ENST00000572809 H2AFXP16104 143 aaPredicted RBP6.58□□□□□ -1.36
NUP88-205ENST00000572809 NCF2P19878 526 aaPredicted RBP6.58□□□□□ -1.36
NUP88-205ENST00000572809 FPR1P21462 350 aa6.58□□□□□ -1.36
NUP88-205ENST00000572809 IL32P24001 234 aa6.58□□□□□ -1.36
NUP88-205ENST00000572809 CXCR1P25024 350 aa6.58□□□□□ -1.36
NUP88-205ENST00000572809 LOXP28300 417 aaPredicted RBP6.58□□□□□ -1.36
NUP88-205ENST00000572809 ACAA2P42765 397 aaKnown RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms