RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 GPA33Q99795 319 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 MND1Q9BWT6 205 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 ASPNQ9BXN1 380 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 ANGPTL4Q9BY76 406 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 EGLN3Q9H6Z9 239 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 AKIRIN1Q9H9L7 192 aaPredicted RBP7.25□□□□□ -1.25
VPS39-213ENST00000570062 ZNF160Q9HCG1 818 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 FGF20Q9NP95 211 aaPredicted RBP7.25□□□□□ -1.25
VPS39-213ENST00000570062 ISYNA1Q9NPH2 558 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 ACOT13Q9NPJ3 140 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 P4HTMQ9NXG6 502 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 HAO2Q9NYQ3 351 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 DIMT1Q9UNQ2 313 aaKnown RBP7.25□□□□□ -1.25
VPS39-213ENST00000570062 NTNG1Q9Y2I2 539 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 MRPS18CQ9Y3D5 142 aaKnown RBP7.25□□□□□ -1.25
VPS39-213ENST00000570062 WIF1Q9Y5W5 379 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 PI4KAP42356 2102 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 FAM208BQ5VWN6 2430 aa7.25□□□□□ -1.25
VPS39-213ENST00000570062 UNC13CQ8NB66 2214 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 TMED7-TICAM2A0A0A6YYA0 188 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 A0A1W2PNR3 127 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 DCDC2BA2VCK2 349 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 EIF4E1BA6NMX2 242 aaKnown RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 GJE1A6NN92 205 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 KPNA4O00629 521 aaPredicted RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 BHLHE40O14503 412 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 CDC42EP2O14613 210 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 SCO2O43819 266 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 AHCYL1O43865 530 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 PRKNO60260 465 aaPredicted RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 CBR3O75828 277 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 P04436 131 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 ASAH2BP0C7U1 165 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 DBTP11182 482 aaKnown RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 CD33P20138 364 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 ACVR2AP27037 513 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 GTF2E2P29084 291 aaKnown RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 RPL4P36578 427 aaKnown RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 CASP3P42574 277 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 GAS1P54826 345 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 CDH11P55287 796 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 RPS4XP62701 263 aaKnown RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 ACTC1P68032 377 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 ACTA1P68133 377 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 TNP2Q05952 138 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 RAB39AQ14964 217 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 NEDD8Q15843 81 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 CRTC2Q53ET0 693 aaPredicted RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 SYT14P1Q58G82 188 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 AADACL4Q5VUY2 407 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 FAM205BPQ63HN1 556 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 WDR88Q6ZMY6 472 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 GDPGP1Q6ZNW5 385 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 Q6ZPB1 254 aaPredicted RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 LINC00299Q6ZSB3 139 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 MEPCEQ7L2J0 689 aaKnown RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 TIPARPQ7Z3E1 657 aaKnown RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 HDDC2Q7Z4H3 204 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 ANKRD13BQ86YJ7 626 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 PLCZ1Q86YW0 608 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 ERI1Q8IV48 349 aaKnown RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 CCDC103Q8IW40 242 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 OR4K17Q8NGC6 315 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 OR51A7Q8NH64 312 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 PFN4Q8NHR9 129 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 MFSD8Q8NHS3 518 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 MUL1Q969V5 352 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 SH3YL1Q96HL8 342 aaPredicted RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 TMEM41AQ96HV5 264 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 ZNF582Q96NG8 517 aaPredicted RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 TNFRSF13CQ96RJ3 184 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 SIGLEC11Q96RL6 698 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 MNTQ99583 582 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 TAPBPLQ9BX59 468 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 JAM3Q9BX67 310 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 CDCP1Q9H5V8 836 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 NRIP3Q9NQ35 241 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 C20orf141Q9NUB4 165 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 PTTG2Q9NZH5 202 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 ERVK-18Q9QC07 812 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 SEC14L4Q9UDX3 406 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 OSGIN1Q9UJX0 560 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 FBXL4Q9UKA2 621 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 MOKQ9UQ07 419 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 TMED7Q9Y3B3 224 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 CEPT1Q9Y6K0 416 aa7.24□□□□□ -1.25
VPS39-213ENST00000570062 TP53BP1Q12888 1972 aaPredicted RBP7.24□□□□□ -1.25
VPS39-213ENST00000570062 MAST4O15021 2626 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 TMEM129A0AVI4 362 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 NPIPB13A6NJU9 1138 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 CDRT15L2A8MXV6 281 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 CENPBD1B2RD01 187 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 NPIPB4C9JG80 1138 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 AGRPO00253 132 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 MYL12BO14950 172 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 PRKYO43930 277 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 SUSD5O60279 629 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 ADAM11O75078 769 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 TXNDC12O95881 172 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms