RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 RPS6KB2Q9UBS0 482 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 USP22Q9UPT9 525 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 FLVCR1Q9Y5Y0 555 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 CAPN7Q9Y6W3 813 aa13.29□□□□□ -0.28
VPS39-210ENST00000568357 IGKV1D-42A0A075B6H8 117 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 AQP7P3A6NL99 342 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 ELOA3DA6NLF2 546 aaPredicted RBP13.28□□□□□ -0.28
VPS39-210ENST00000568357 FTCDNL1E5RQL4 147 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 SLC22A2O15244 555 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 MRPL33O75394 65 aaKnown RBP13.28□□□□□ -0.28
VPS39-210ENST00000568357 LYZL6O75951 148 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 CNOT4O95628 575 aaKnown RBP13.28□□□□□ -0.28
VPS39-210ENST00000568357 IGHV1-2P23083 117 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 IL32P24001 234 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 RPS5P46782 204 aaKnown RBP13.28□□□□□ -0.28
VPS39-210ENST00000568357 P2RY4P51582 365 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 CRYBA2P53672 197 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 RGS8P57771 180 aaPredicted RBP13.28□□□□□ -0.28
VPS39-210ENST00000568357 OR1Q1Q15612 314 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 ELOA3BQ3SY89 546 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 ALG10BQ5I7T1 473 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 FBXW9Q5XUX1 488 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 ALKBH2Q6NS38 261 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 ULK3Q6PHR2 472 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 PAMR1Q6UXH9 720 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 WFDC8Q8IUA0 241 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 P3H2Q8IVL5 708 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 ELOA3Q8NG57 546 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 DNAJA4Q8WW22 397 aaPredicted RBP13.28□□□□□ -0.28
VPS39-210ENST00000568357 NINJ1Q92982 152 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 KISS1RQ969F8 398 aaPredicted RBP13.28□□□□□ -0.28
VPS39-210ENST00000568357 SLC38A4Q969I6 547 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 APH1AQ96BI3 265 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 KTI12Q96EK9 354 aaPredicted RBP13.28□□□□□ -0.28
VPS39-210ENST00000568357 ZNF583Q96ND8 569 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 ARHGDIGQ99819 225 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 SH3GL1Q99961 368 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 ELAC2Q9BQ52 826 aaKnown RBP13.28□□□□□ -0.28
VPS39-210ENST00000568357 ECSITQ9BQ95 431 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 TAPBPLQ9BX59 468 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 C12orf10Q9HB07 376 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 SLC13A4Q9UKG4 626 aa13.28□□□□□ -0.28
VPS39-210ENST00000568357 HRNRQ86YZ3 2850 aaPredicted RBP13.28□□□□□ -0.28
VPS39-210ENST00000568357 A0A0B4J2E0 115 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.27□□□□□ -0.29
VPS39-210ENST00000568357 A0A1B0GX12 115 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 M0R3H8 397 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 ATE1O95260 518 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 AHSA1O95433 338 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 C8BP07358 591 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 CD247P20963 164 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 DNASE1P24855 282 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 GYS2P54840 703 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 CDH12P55289 794 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 FOXG1P55316 489 aaPredicted RBP13.27□□□□□ -0.29
VPS39-210ENST00000568357 TAB1Q15750 504 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 NPTX1Q15818 432 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 FAM91A1Q658Y4 838 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 TMEM225Q6GV28 225 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 CCDC80Q76M96 950 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 BHLHA15Q7RTS1 189 aaPredicted RBP13.27□□□□□ -0.29
VPS39-210ENST00000568357 PATL1Q86TB9 770 aaKnown RBP13.27□□□□□ -0.29
VPS39-210ENST00000568357 TREML1Q86YW5 311 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 RBM45Q8IUH3 476 aaKnown RBP13.27□□□□□ -0.29
VPS39-210ENST00000568357 SLC30A8Q8IWU4 369 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 UBE2J2Q8N2K1 259 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 PCYOX1LQ8NBM8 494 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 OR9K2Q8NGE7 335 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 OR4D11Q8NGI4 311 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 MFSD8Q8NHS3 518 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 RP9Q8TA86 221 aaKnown RBP13.27□□□□□ -0.29
VPS39-210ENST00000568357 HSD17B8Q92506 261 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 TAAR8Q969N4 342 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 SLC25A36Q96CQ1 311 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 RCN3Q96D15 328 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 ZNF385AQ96PM9 386 aaKnown RBP13.27□□□□□ -0.29
VPS39-210ENST00000568357 SF3B5Q9BWJ5 86 aaKnown RBP13.27□□□□□ -0.29
VPS39-210ENST00000568357 TMEM27Q9HBJ8 222 aa13.27□□□□□ -0.29
VPS39-210ENST00000568357 TESQ9UGI8 421 aaKnown RBP13.27□□□□□ -0.29
VPS39-210ENST00000568357 A0A087WUJ7 227 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 CCT8L1PA6NM43 557 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 CCDC22O60826 627 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 RAF1P04049 648 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 PNMTP11086 282 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 COX4I1P13073 169 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 ACANP16112 2415 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 COX5AP20674 150 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 ABCA4P78363 2273 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 NRF1Q16656 503 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 BEX5Q5H9J7 111 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 INTS11Q5TA45 600 aaKnown RBP13.26□□□□□ -0.29
VPS39-210ENST00000568357 SPATA21Q7Z572 469 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 GPAT4Q86UL3 456 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 TGIF2LYQ8IUE0 185 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 KDM8Q8N371 416 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 ZNF433Q8N7K0 673 aaPredicted RBP13.26□□□□□ -0.29
VPS39-210ENST00000568357 OR6T1Q8NGN1 323 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 SLC47A1Q96FL8 570 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 PLPPR2Q96GM1 343 aa13.26□□□□□ -0.29
VPS39-210ENST00000568357 MCHR1Q99705 422 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms