RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 TRBV5-3A0A0A0MS03 114 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 AQP7P3A6NL99 342 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 CCT8L1PA6NM43 557 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 A8MVM7 634 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 TMEM229AB2RXF0 380 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 NR5A2O00482 541 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 NPIPB7O75200 414 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 NDUFS7O75251 213 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 GPIP06744 558 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 PTNP21246 168 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 ZNF83P51522 516 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 STX1BP61266 288 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 COPZ1P61923 177 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 SLC25A3Q00325 362 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 SPOCK1Q08629 439 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 FADDQ13158 208 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 TNK1Q13470 666 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 ZSWIM7Q19AV6 140 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 ZNF311Q5JNZ3 666 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 PRAMEF8Q5VWM4 474 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 PRAMEF7Q5VXH5 474 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 COMTD1Q86VU5 262 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 GOLGA6L1Q8N7Z2 621 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 WDR31Q8NA23 367 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 OR9K2Q8NGE7 335 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 TMEM45BQ96B21 275 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 SPDL1Q96EA4 605 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 TRAF4Q9BUZ4 470 aaPredicted RBP9.51□□□□□ -0.89
VPS39-208ENST00000564994 AMBRA1Q9C0C7 1298 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 IKZF5Q9H5V7 419 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 CISD1Q9NZ45 108 aaKnown RBP9.51□□□□□ -0.89
VPS39-208ENST00000564994 VAPAQ9P0L0 249 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 PRDM4Q9UKN5 801 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 IFT52Q9Y366 437 aa9.51□□□□□ -0.89
VPS39-208ENST00000564994 ARFGEF3Q5TH69 2177 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 A0A1W2PP18 115 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 TMEM247A6NEH6 219 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 FAM171A2A8MVW0 826 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 FTCDNL1E5RQL4 147 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 E7EQL1 145 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 ARAFP10398 606 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 NCF2P19878 526 aaPredicted RBP9.5□□□□□ -0.89
VPS39-208ENST00000564994 CD40P25942 277 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 CDH11P55287 796 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 EGR4Q05215 589 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 GLIPR1L2Q4G1C9 344 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 C1orf140Q5VVS0 124 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 B3GLCTQ6Y288 498 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 SSX8Q7RTT4 187 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 GPAT4Q86UL3 456 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 DTX2Q86UW9 622 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 NFKBIDQ8NI38 313 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 BBS10Q8TAM1 723 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 PTDSS2Q9BVG9 487 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 SF3B5Q9BWJ5 86 aaKnown RBP9.5□□□□□ -0.89
VPS39-208ENST00000564994 C1QTNF6Q9BXI9 259 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 RAD21L1Q9H4I0 556 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 PARPBPQ9NWS1 579 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 ADPRHL2Q9NX46 363 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 UPB1Q9UBR1 384 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 DCTN4Q9UJW0 460 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 GMEB1Q9Y692 573 aa9.5□□□□□ -0.89
VPS39-208ENST00000564994 TPST1O60507 370 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 IGHV4-39P01824 125 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 ETS2P15036 469 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 HTR2AP28223 471 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 PRKAR1BP31321 381 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 ATP4BP51164 291 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 CDK6Q00534 326 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 KRTAP1-1Q07627 177 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 LGALS3BPQ08380 585 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 ADRM1Q16186 407 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 CLEC12BQ2HXU8 276 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 AGKQ53H12 422 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 GCNT6Q5T4J0 391 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 OR7E24Q6IFN5 339 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 TMEM108Q6UXF1 575 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 DLEU7Q6UYE1 221 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 CREB3L2Q70SY1 520 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 AAED1Q7RTV5 226 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 EPHX4Q8IUS5 362 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 KDM8Q8N371 416 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 C1orf162Q8NEQ5 155 aaPredicted RBP9.49□□□□□ -0.89
VPS39-208ENST00000564994 STK35Q8TDR2 534 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 SLC35B4Q969S0 331 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 GTPBP3Q969Y2 492 aaKnown RBP9.49□□□□□ -0.89
VPS39-208ENST00000564994 KTI12Q96EK9 354 aaPredicted RBP9.49□□□□□ -0.89
VPS39-208ENST00000564994 THOC1Q96FV9 657 aaKnown RBP9.49□□□□□ -0.89
VPS39-208ENST00000564994 TRMT61AQ96FX7 289 aaKnown RBP9.49□□□□□ -0.89
VPS39-208ENST00000564994 PRR14Q9BWN1 585 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 TAPBPLQ9BX59 468 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 SLCO5A1Q9H2Y9 848 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 ARMC7Q9H6L4 198 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 SLC17A5Q9NRA2 495 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 SEC14L4Q9UDX3 406 aa9.49□□□□□ -0.89
VPS39-208ENST00000564994 GDF2Q9UK05 429 aaPredicted RBP9.49□□□□□ -0.89
VPS39-208ENST00000564994 YLPM1P49750 1951 aaKnown RBP9.49□□□□□ -0.89
VPS39-208ENST00000564994 IGKV1D-42A0A075B6H8 117 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 C5orf58C9J3I9 102 aa9.48□□□□□ -0.89
VPS39-208ENST00000564994 M0R1B8 84 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms