RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 MAMDC2Q7Z304 686 aaPredicted RBP18.51■□□□□ 0.55
CLN3-212ENST00000564574 C10orf53Q8N6V4 93 aa18.51■□□□□ 0.55
CLN3-212ENST00000564574 ICA1LQ8NDH6 482 aa18.51■□□□□ 0.55
CLN3-212ENST00000564574 GNPDA2Q8TDQ7 276 aa18.51■□□□□ 0.55
CLN3-212ENST00000564574 OSTF1Q92882 214 aa18.51■□□□□ 0.55
CLN3-212ENST00000564574 OSBPL10Q9BXB5 764 aa18.51■□□□□ 0.55
CLN3-212ENST00000564574 ASPNQ9BXN1 380 aa18.51■□□□□ 0.55
CLN3-212ENST00000564574 RNPEPL1Q9HAU8 725 aa18.51■□□□□ 0.55
CLN3-212ENST00000564574 C20orf141Q9NUB4 165 aa18.51■□□□□ 0.55
CLN3-212ENST00000564574 ZNF835Q9Y2P0 537 aa18.51■□□□□ 0.55
CLN3-212ENST00000564574 CORINQ9Y5Q5 1042 aa18.51■□□□□ 0.55
CLN3-212ENST00000564574 ZGRF1Q86YA3 2104 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 B8ZZF3 427 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 G3V2T6 193 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 H0YC42 278 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 CXCL13O43927 109 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 WDR1O75083 606 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 CH25HO95992 272 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 TPOP07202 933 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 ANXA8P13928 327 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 GABRA1P14867 456 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 SLC9A3P48764 834 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 TPD52P55327 224 aaPredicted RBP18.5■□□□□ 0.55
CLN3-212ENST00000564574 NUP107P57740 925 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 LSM11P83369 360 aaKnown RBP eCLIP18.5■□□□□ 0.55
CLN3-212ENST00000564574 SGCBQ16585 318 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 Q6ZPB1 254 aaPredicted RBP18.5■□□□□ 0.55
CLN3-212ENST00000564574 SLC46A3Q7Z3Q1 461 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 ZER1Q7Z7L7 766 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 OR9Q2Q8NGE9 314 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 SLC25A36Q96CQ1 311 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 FAM46AQ96IP4 442 aaKnown RBP18.5■□□□□ 0.55
CLN3-212ENST00000564574 NAA11Q9BSU3 229 aaPredicted RBP18.5■□□□□ 0.55
CLN3-212ENST00000564574 DGCR6LQ9BY27 220 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 GABARAPL1Q9H0R8 117 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 NANSQ9NR45 359 aa18.5■□□□□ 0.55
CLN3-212ENST00000564574 FIGNL2A6NMB9 653 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 EFCAB9A8MZ26 197 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 PRRG2O14669 202 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 SYNGR4O95473 234 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 ADAP00813 363 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 HOXD4P09016 255 aaPredicted RBP18.49■□□□□ 0.55
CLN3-212ENST00000564574 FUT1P19526 365 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 FPR3P25089 353 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 LTBQ06643 244 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 C19orf57Q0VDD7 668 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 LAPTM4AQ15012 233 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 C3AR1Q16581 482 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 ANKDD1AQ495B1 522 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 SCAIQ8N9R8 606 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 AQP11Q8NBQ7 271 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 ADPRHL1Q8NDY3 354 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 DNAJC9Q8WXX5 260 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 MOGAT1Q96PD6 335 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 UCN2Q96RP3 112 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 TUBA1CQ9BQE3 449 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 C9orf16Q9BUW7 83 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 PNPLA3Q9NST1 481 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 MCTS1Q9ULC4 181 aaKnown RBP18.49■□□□□ 0.55
CLN3-212ENST00000564574 OAZ3Q9UMX2 235 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 ZNF175Q9Y473 711 aa18.49■□□□□ 0.55
CLN3-212ENST00000564574 SAC3D1A6NKF1 404 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 KLF4O43474 513 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 HIST1H2ABP04908 130 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 ASAH2BP0C7U1 165 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 SAGP10523 405 aaPredicted RBP18.48■□□□□ 0.55
CLN3-212ENST00000564574 MAKP20794 623 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 GSTM3P21266 225 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 ENPP1P22413 925 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 CBLP22681 906 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 GRPRP30550 384 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 GPR4P46093 362 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 GSSP48637 474 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 AGFG1P52594 562 aaKnown RBP18.48■□□□□ 0.55
CLN3-212ENST00000564574 SLC34A1Q06495 639 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 TSPAN31Q12999 210 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 ZNF239Q16600 458 aaKnown RBP18.48■□□□□ 0.55
CLN3-212ENST00000564574 PAQR6Q6TCH4 344 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 HIST3H2AQ7L7L0 130 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 ADGRE4PQ86SQ3 457 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 STK32CQ86UX6 486 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 CD163Q86VB7 1156 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 LSRQ86X29 649 aaPredicted RBP18.48■□□□□ 0.55
CLN3-212ENST00000564574 OR5J2Q8NH18 312 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 HIST1H2ACQ93077 130 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 RELTQ969Z4 430 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 DNAJA3Q96EY1 480 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 FEVQ99581 238 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 SRXN1Q9BYN0 137 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 MRPL39Q9NYK5 338 aaKnown RBP18.48■□□□□ 0.55
CLN3-212ENST00000564574 ARHGAP21Q5T5U3 1957 aa18.48■□□□□ 0.55
CLN3-212ENST00000564574 CLCA1A8K7I4 914 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 LRRN3E7EW58 273 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 SLC19A2O60779 497 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 ATP6V1G2O95670 118 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 GASTP01350 101 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 H3F3AP84243 136 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 EMC4Q5J8M3 183 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 ZNF585AQ6P3V2 769 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 H1FNTQ75WM6 255 aaPredicted RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms