RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 APH1AQ96BI3 265 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 ZNF775Q96BV0 537 aaPredicted RBP11.88□□□□□ -0.51
CLK3-216ENST00000564468 ACTR6Q9GZN1 396 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 NGBQ9NPG2 151 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 ARMCX1Q9P291 453 aa11.88□□□□□ -0.51
CLK3-216ENST00000564468 A0A1B0GWA3 101 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 GMNCA6NCL1 334 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 AQP7P3A6NL99 342 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 FXYD1O00168 92 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 DYNC1I1O14576 645 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 NPIPB7O75200 414 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 GCM2O75603 506 aaPredicted RBP11.87□□□□□ -0.51
CLK3-216ENST00000564468 ADAP00813 363 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 COX4I1P13073 169 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 KLK2P20151 261 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 LSP1P33241 339 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 GZMMP51124 257 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 SLC17A1Q14916 467 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 MFSD13AQ14CX5 517 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 OR1Q1Q15612 314 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 BEX5Q5H9J7 111 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 SWT1Q5T5J6 900 aaKnown RBP11.87□□□□□ -0.51
CLK3-216ENST00000564468 FBXW9Q5XUX1 488 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 CALHM3Q86XJ0 350 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 UBE2J2Q8N2K1 259 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 SMYD1Q8NB12 490 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 RNF217Q8TC41 542 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 HSD17B8Q92506 261 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 CMTM5Q96DZ9 223 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 ZC3HAV1LQ96H79 300 aaKnown RBP11.87□□□□□ -0.51
CLK3-216ENST00000564468 EPYCQ99645 322 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 HOPXQ9BPY8 73 aaPredicted RBP11.87□□□□□ -0.51
CLK3-216ENST00000564468 EFCAB1Q9HAE3 211 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 ADPRHL2Q9NX46 363 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 RASD1Q9Y272 281 aa11.87□□□□□ -0.51
CLK3-216ENST00000564468 ROS1P08922 2347 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 ZNF814B7Z6K7 855 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 NDUFAB1O14561 156 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 AKR7A3O95154 331 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 OPN1SWP03999 348 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 DNASE1P24855 282 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 HTR2AP28223 471 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 DNAJA1P31689 397 aaKnown RBP11.86□□□□□ -0.51
CLK3-216ENST00000564468 SEC24CP53992 1094 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 NR1H2P55055 460 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 NRF1Q16656 503 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 DUSP7Q16829 419 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 FAM69AQ5T7M9 428 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 ZNF613Q6PF04 617 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 BHLHA15Q7RTS1 189 aaPredicted RBP11.86□□□□□ -0.51
CLK3-216ENST00000564468 POU5F2Q8N7G0 328 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 TMEM99Q8N816 258 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 PROX1Q92786 737 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 RCN3Q96D15 328 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 MCHR1Q99705 422 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 ARHGDIGQ99819 225 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 RSPO3Q9BXY4 272 aaPredicted RBP11.86□□□□□ -0.51
CLK3-216ENST00000564468 FAM107BQ9H098 131 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 C6orf203Q9P0P8 240 aaPredicted RBP11.86□□□□□ -0.51
CLK3-216ENST00000564468 PRSS50Q9UI38 385 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 ST6GALNAC2Q9UJ37 374 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 BAG5Q9UL15 447 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 FLVCR1Q9Y5Y0 555 aa11.86□□□□□ -0.51
CLK3-216ENST00000564468 TRAV36DV7A0A075B6V5 113 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 A0A087WUJ7 227 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 A0A0B4J2E0 115 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 A0A1B0GX12 115 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 FAM220BPB1ANY3 271 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 AIM2O14862 343 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 SNX3O60493 162 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 RPS5P46782 204 aaKnown RBP11.85□□□□□ -0.51
CLK3-216ENST00000564468 POU4F3Q15319 338 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 CASP12Q6UXS9 341 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 ABHD12BQ7Z5M8 362 aaPredicted RBP11.85□□□□□ -0.51
CLK3-216ENST00000564468 GPAT4Q86UL3 456 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 COMTD1Q86VU5 262 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 P2RY8Q86VZ1 359 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 OR2T12Q8NG77 320 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 OR9K2Q8NGE7 335 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 OR6S1Q8NH40 331 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 TMEM45BQ96B21 275 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 S100PBPQ96BU1 408 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 SLC25A36Q96CQ1 311 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 PIK3IP1Q96FE7 263 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 ZNF583Q96ND8 569 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 PLEKHF2Q9H8W4 249 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 ASB6Q9NWX5 421 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 UPB1Q9UBR1 384 aa11.85□□□□□ -0.51
CLK3-216ENST00000564468 HRNRQ86YZ3 2850 aaPredicted RBP11.85□□□□□ -0.51
CLK3-216ENST00000564468 CADP27708 2225 aa11.84□□□□□ -0.51
CLK3-216ENST00000564468 CIB4A0PJX0 185 aa11.84□□□□□ -0.51
CLK3-216ENST00000564468 ELOVL7A1L3X0 281 aa11.84□□□□□ -0.51
CLK3-216ENST00000564468 OR6C65A6NJZ3 312 aa11.84□□□□□ -0.51
CLK3-216ENST00000564468 DEFB108AA8MXU0 73 aa11.84□□□□□ -0.51
CLK3-216ENST00000564468 M0R3H8 397 aa11.84□□□□□ -0.51
CLK3-216ENST00000564468 CHP2O43745 196 aa11.84□□□□□ -0.51
CLK3-216ENST00000564468 RAMP1O60894 148 aa11.84□□□□□ -0.51
CLK3-216ENST00000564468 RAF1P04049 648 aa11.84□□□□□ -0.51
CLK3-216ENST00000564468 THBDP07204 575 aa11.84□□□□□ -0.51
CLK3-216ENST00000564468 COX5AP20674 150 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms