RNA–Protein interactions for RNA: ENST00000563207.1

USB1-208, Transcript of U6 snRNA biogenesis phosphodiesterase 1, human

TSL 5

Gene USB1, Length 464 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USB1-208	ENST00000563207	DACH2	Q96NX9	599 aa		13.98	□□□□□ -0.17
USB1-208	ENST00000563207	SMR3A	Q99954	134 aa		13.98	□□□□□ -0.17
USB1-208	ENST00000563207	TMED7	Q9Y3B3	224 aa		13.98	□□□□□ -0.17
USB1-208	ENST00000563207	HDGFL3	Q9Y3E1	203 aa		13.98	□□□□□ -0.17
USB1-208	ENST00000563207		M0R3H8	397 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	EIF1AY	O14602	144 aa	Known RBP	13.97	□□□□□ -0.17
USB1-208	ENST00000563207	ARPC2	O15144	300 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	GSC2	O15499	205 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	CD53	P19397	219 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	HTR2A	P28223	471 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	SLC7A1	P30825	629 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	IFNA8	P32881	189 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	HOXC5	Q00444	222 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	KEAP1	Q14145	624 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	PON3	Q15166	354 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	DEFB113	Q30KQ7	82 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	TMEM176B	Q3YBM2	270 aa	Predicted RBP	13.97	□□□□□ -0.17
USB1-208	ENST00000563207	IFI44L	Q53G44	452 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	SYT14P1	Q58G82	188 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	ALG10B	Q5I7T1	473 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	ANKRD34A	Q69YU3	496 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	C5orf46	Q6UWT4	87 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	FKBP9P1	Q75LS8	142 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	ATG4D	Q86TL0	474 aa	Predicted RBP	13.97	□□□□□ -0.17
USB1-208	ENST00000563207	DHFR2	Q86XF0	187 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	ZNF610	Q8N9Z0	462 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	OR2V1	Q8NHB1	315 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	SLC38A4	Q969I6	547 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	ADGRG7	Q96K78	797 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	ALPK1	Q96QP1	1244 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	POTEKP	Q9BYX7	375 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	PIGM	Q9H3S5	423 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	DLL4	Q9NR61	685 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	13.97	□□□□□ -0.17
USB1-208	ENST00000563207	CLEC4A	Q9UMR7	237 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	ZNF175	Q9Y473	711 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207	TESMIN	Q9Y4I5	508 aa		13.97	□□□□□ -0.17
USB1-208	ENST00000563207		A0A0B4J2E0	115 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207		A0A0J9YW62	118 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207		A0A1B0GWA3	101 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207		A0A1B0GX12	115 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207		A8MVM7	634 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	DEFB108A	A8MXU0	73 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	MSTN	O14793	375 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	DNPH1	O43598	174 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	TPST2	O60704	377 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	IFNW1	P05000	195 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	THRB	P10828	461 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	IL11	P20809	199 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	SFTPD	P35247	375 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	MSX2	P35548	267 aa	Predicted RBP	13.96	□□□□□ -0.17
USB1-208	ENST00000563207	CARD18	P57730	90 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	RAC3	P60763	192 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	NPTX1	Q15818	432 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	SGCB	Q16585	318 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	CTU2	Q2VPK5	515 aa	Known RBP	13.96	□□□□□ -0.17
USB1-208	ENST00000563207	ENTPD8	Q5MY95	495 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	HBM	Q6B0K9	141 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	LCN8	Q6JVE9	175 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	PGM2L1	Q6PCE3	622 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	LSR	Q86X29	649 aa	Predicted RBP	13.96	□□□□□ -0.17
USB1-208	ENST00000563207	VANGL1	Q8TAA9	524 aa	Predicted RBP	13.96	□□□□□ -0.17
USB1-208	ENST00000563207	STK35	Q8TDR2	534 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	ADAMTS16	Q8TE57	1224 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	CPNE4	Q96A23	557 aa	Predicted RBP	13.96	□□□□□ -0.17
USB1-208	ENST00000563207	MCUR1	Q96AQ8	359 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	MBD6	Q96DN6	1003 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	POM121	Q96HA1	1249 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	WFDC6	Q9BQY6	131 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	LRMDA	Q9H2I8	198 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	TMEM185B	Q9H7F4	350 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	RNF122	Q9H9V4	155 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	TRAPPC4	Q9Y296	219 aa		13.96	□□□□□ -0.17
USB1-208	ENST00000563207	FLNA	P21333	2647 aa	Known RBP	13.95	□□□□□ -0.18
USB1-208	ENST00000563207		A0A087WUJ7	227 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	TRAPPC13	A5PLN9	417 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	ELOA3D	A6NLF2	546 aa	Predicted RBP	13.95	□□□□□ -0.18
USB1-208	ENST00000563207	TNFSF11	O14788	317 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	CHP2	O43745	196 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	OR5F1	O95221	314 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	HOXB4	P17483	251 aa	Predicted RBP	13.95	□□□□□ -0.18
USB1-208	ENST00000563207	CD79B	P40259	229 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	EIF1AX	P47813	144 aa	Known RBP	13.95	□□□□□ -0.18
USB1-208	ENST00000563207	CSNK2A1	P68400	391 aa	Predicted RBP	13.95	□□□□□ -0.18
USB1-208	ENST00000563207	GUSBP1	Q15486	140 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	ELOA3B	Q3SY89	546 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	EEF1A1P5	Q5VTE0	462 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	PPP4R4	Q6NUP7	873 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	TMPPE	Q6ZT21	453 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	VTCN1	Q7Z7D3	282 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	ATP6V1C2	Q8NEY4	427 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	ELOA3	Q8NG57	546 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	OR4D11	Q8NGI4	311 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	OR10D3	Q8NH80	312 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	OSTF1	Q92882	214 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	ZC3HAV1L	Q96H79	300 aa	Known RBP	13.95	□□□□□ -0.18
USB1-208	ENST00000563207	PYURF	Q96I23	114 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	MPP4	Q96JB8	637 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	HSH2D	Q96JZ2	352 aa		13.95	□□□□□ -0.18
USB1-208	ENST00000563207	HS3ST6	Q96QI5	342 aa		13.95	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms