RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 FBXO34Q9NWN3 711 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 ERVK13-1Q9NX77 482 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 MRPL39Q9NYK5 338 aaKnown RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 KLRF1Q9NZS2 232 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 PPP4R1LQ9P1A2 415 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 OSGIN1Q9UJX0 560 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 B3GALT5Q9Y2C3 310 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 HDGFL3Q9Y3E1 203 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 WIF1Q9Y5W5 379 aa6.86□□□□□ -1.31
VPS39-204ENST00000561818 ARID1BQ8NFD5 2236 aaPredicted RBP6.86□□□□□ -1.31
VPS39-204ENST00000561818 IGHV1-45A0A0A0MS14 117 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 TRDV1A0A1B0GX56 115 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 A8MUA0 341 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 M0R082 166 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 KPNA4O00629 521 aaPredicted RBP6.85□□□□□ -1.31
VPS39-204ENST00000561818 SUSD5O60279 629 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 PIP5K1CO60331 668 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 CBFA2T3O75081 653 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 SULT1C4O75897 302 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 GLCEO94923 617 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 CH25HO95992 272 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 HPP00738 406 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 SBK2P0C263 348 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 ZNF17P17021 662 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 MYL9P24844 172 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 PCSK6P29122 969 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 TACR3P29371 465 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 UQCRC1P31930 480 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 LIPAP38571 399 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 CASRP41180 1078 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 ETV6P41212 452 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 SSR4P51571 173 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 PSMD7P51665 324 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 HOXC5Q00444 222 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 ZNF117Q03924 483 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 ZP4Q12836 540 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 SELENBP1Q13228 472 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 SRSF5Q13243 272 aaKnown RBP6.85□□□□□ -1.31
VPS39-204ENST00000561818 QPRTQ15274 297 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 CD226Q15762 336 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 TSTQ16762 297 aaKnown RBP6.85□□□□□ -1.31
VPS39-204ENST00000561818 PLBD1Q6P4A8 553 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 ZNF322Q6U7Q0 402 aaPredicted RBP6.85□□□□□ -1.31
VPS39-204ENST00000561818 FAM198BQ6UWH4 519 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 C6orf15Q6UXA7 325 aaPredicted RBP6.85□□□□□ -1.31
VPS39-204ENST00000561818 PLEKHG7Q6ZR37 379 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 ZAR1Q86SH2 424 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 GLRX5Q86SX6 157 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 TMEM156Q8N614 296 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 ZNF454Q8N9F8 522 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 SLC37A3Q8NCC5 494 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 OR51A7Q8NH64 312 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 UBE2FQ969M7 185 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 KIAA1143Q96AT1 154 aaPredicted RBP6.85□□□□□ -1.31
VPS39-204ENST00000561818 OPALINQ96PE5 141 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 TEAD3Q99594 435 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 CCDC32Q9BV29 185 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 ALG8Q9BVK2 526 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 NXF2Q9GZY0 626 aaKnown RBP6.85□□□□□ -1.31
VPS39-204ENST00000561818 NUAK2Q9H093 628 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 AMBNQ9NP70 447 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 HINT3Q9NQE9 182 aaKnown RBP6.85□□□□□ -1.31
VPS39-204ENST00000561818 C20orf141Q9NUB4 165 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 TBCCD1Q9NVR7 557 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 BABAM2Q9NXR7 383 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 ALKBH4Q9NXW9 302 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 KCNG2Q9UJ96 466 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 LOXL2Q9Y4K0 774 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 UGT2A1Q9Y4X1 527 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 FKBP7Q9Y680 259 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 ADAMTS9Q9P2N4 1935 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 TECTAO75443 2155 aa6.85□□□□□ -1.31
VPS39-204ENST00000561818 SEC16AO15027 2179 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 TRAV27A0A087WT01 109 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 TMED7-TICAM2A0A0A6YYA0 188 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 LOC100506127A0A0U1RQW1 187 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 A0A1W2PNV4 684 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 LNP1A1A4G5 178 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 C12orf71A8MTZ7 269 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 ZNF879B4DU55 563 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 J3QRE1 110 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 PLPP2O43688 288 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 TLX3O43711 291 aaPredicted RBP6.84□□□□□ -1.31
VPS39-204ENST00000561818 EIF1BO60739 113 aaKnown RBP6.84□□□□□ -1.31
VPS39-204ENST00000561818 TMCC2O75069 709 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 NPIPB7O75200 414 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 RGS9O75916 674 aaPredicted RBP6.84□□□□□ -1.31
VPS39-204ENST00000561818 STK17BO94768 372 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 VAMP5O95183 116 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 PPP1R3DO95685 299 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 SLC2A5P22732 501 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 GADD45AP24522 165 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 IDUAP35475 653 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 TGM4P49221 684 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 DIO1P49895 249 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 CAPZA1P52907 286 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 SLC16A1P53985 500 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 VBP1P61758 197 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 PLAURQ03405 335 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms