RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 HCCSP53701 268 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 FOXK2Q01167 660 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 RHAGQ02094 409 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 ILKQ13418 452 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 SNTB1Q13884 538 aaKnown RBP4.96□□□□□ -1.62
VPS13C-209ENST00000560637 SEC23BQ15437 767 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF658BQ4V348 819 aaPredicted RBP4.96□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF544Q6NX49 715 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 CORO6Q6QEF8 472 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 FAM198BQ6UWH4 519 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 GFRALQ6UXV0 394 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 AAED1Q7RTV5 226 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 ZER1Q7Z7L7 766 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 CLDN22Q8N7P3 220 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 OR4D11Q8NGI4 311 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 GATAD2BQ8WXI9 593 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 RFKQ969G6 155 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 SLCO4A1Q96BD0 722 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 TSC22D3Q99576 134 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 NAA11Q9BSU3 229 aaPredicted RBP4.96□□□□□ -1.62
VPS13C-209ENST00000560637 INIPQ9NRY2 104 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 ASB6Q9NWX5 421 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 PLEK2Q9NYT0 353 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 TESQ9UGI8 421 aaKnown RBP4.96□□□□□ -1.62
VPS13C-209ENST00000560637 KLF13Q9Y2Y9 288 aaPredicted RBP4.96□□□□□ -1.62
VPS13C-209ENST00000560637 PCDHGA1Q9Y5H4 931 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 WIF1Q9Y5W5 379 aa4.96□□□□□ -1.62
VPS13C-209ENST00000560637 CDHR4A6H8M9 788 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 CLCA1A8K7I4 914 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 SOCS6O14544 535 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 CASKO14936 926 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 ENTPD6O75354 484 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 CCDC159P0C7I6 412 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 PNMTP11086 282 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 OSMP13725 252 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 C21orf33P30042 268 aaPredicted RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 PRKAR1BP31321 381 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 SLC1A3P43003 542 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 GIPRP48546 466 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 POLR2HP52434 150 aaKnown RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 PNLIPRP2P54317 469 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 UBE2NP61088 152 aaKnown RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 KRR1Q13601 381 aaKnown RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 INAQ16352 499 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 TP53I3Q53FA7 332 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 SYT14P1Q58G82 188 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 ZCCHC12Q6PEW1 402 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 BATF2Q8N1L9 274 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 POGLUT1Q8NBL1 392 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF721Q8TF20 911 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 FAM131CQ96AQ9 280 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 SGCZQ96LD1 299 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 PIGQQ9BRB3 760 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 WDR76Q9H967 626 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 MED17Q9NVC6 651 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 SEC14L4Q9UDX3 406 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 NOSIPQ9Y314 301 aaKnown RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 GPC6Q9Y625 555 aaPredicted RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 PRAMEF27A3QJZ7 478 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 C12orf71A8MTZ7 269 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 AKAP8O43823 692 aaKnown RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 RASAL1O95294 804 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 GPANK1O95872 356 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 ADAP00813 363 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 KRT8P05787 483 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 C8BP07358 591 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 MSL3P1P0C860 447 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF883P0CG24 379 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 CLUP10909 449 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 EDN3P14138 238 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 MAKP20794 623 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 ENPP1P22413 925 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 IL32P24001 234 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 AZGP1P25311 298 aaKnown RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 CSNK1A1P48729 337 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 FAPQ12884 760 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 ZBED5Q49AG3 693 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 LIPKQ5VXJ0 399 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 OR7E24Q6IFN5 339 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 C16orf87Q6PH81 154 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 APOOLQ6UXV4 268 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 TMPRSS11AQ6ZMR5 421 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 UTS2BQ765I0 119 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 PPP1R32Q7Z5V6 425 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 KLBQ86Z14 1044 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 PM20D2Q8IYS1 436 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 PLPP5Q8NEB5 264 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 GOT1L1Q8NHS2 421 aaPredicted RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 FNDC9Q8TBE3 224 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 ABTB1Q969K4 478 aaPredicted RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 DTNBP1Q96EV8 351 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 MRPL48Q96GC5 212 aaKnown RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 LMF2Q9BU23 707 aaKnown RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 GPR87Q9BY21 358 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF350Q9GZX5 532 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 ACER3Q9NUN7 267 aa4.95□□□□□ -1.62
VPS13C-209ENST00000560637 TUBA8Q9NY65 449 aaPredicted RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 VSX1Q9NZR4 365 aaPredicted RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF346Q9UL40 294 aaKnown RBP4.95□□□□□ -1.62
VPS13C-209ENST00000560637 PCDH15Q96QU1 1955 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms