RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 TRAV6A0A075B6T7 132 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 GALNSP34059 522 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 GPR3P46089 330 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 SLC25A1P53007 311 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 RPL6Q02878 288 aaKnown RBP12.36□□□□□ -0.43
SHMT2-222ENST00000555774 FUT7Q11130 342 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 HTR4Q13639 388 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 KCTD20Q7Z5Y7 419 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 TAF8Q7Z7C8 310 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 SLC35F3Q8IY50 421 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 BCORP1Q8N888 145 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 OR6C4Q8NGE1 309 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 OR56B4Q8NH76 319 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 C3orf49Q96BT1 292 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 GPR137Q96N19 417 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 ZFP3Q96NJ6 502 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 OR14A2Q96R54 314 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 PELOQ9BRX2 385 aaKnown RBP12.36□□□□□ -0.43
SHMT2-222ENST00000555774 UCKL1Q9NWZ5 548 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 COPS3Q9UNS2 423 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 ZNF281Q9Y2X9 895 aa12.36□□□□□ -0.43
SHMT2-222ENST00000555774 TRABD2BA6NFA1 517 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 NAP1L6A6NFF2 107 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 SMLR1H3BR10 107 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 TGFBR3LH3BV60 316 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 AIPO00170 330 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 IMPA2O14732 288 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 AKR7A2O43488 359 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 ECDO95905 644 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-222ENST00000555774 H2AFB2P0C5Z0 115 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 CT45A8P0DMV1 189 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 CT45A9P0DMV2 189 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 PNMTP11086 282 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 SRMP19623 302 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 GIFP27352 417 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 ADH7P40394 386 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 PBX2P40425 430 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 CCR5P51681 352 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 PPP1CAP62136 330 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 GPLD1P80108 840 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 HHEXQ03014 270 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 EIF2B5Q13144 721 aaKnown RBP12.35□□□□□ -0.43
SHMT2-222ENST00000555774 CT45A2Q5DJT8 189 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 TMEM92Q6UXU6 159 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 LSRQ86X29 649 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-222ENST00000555774 FAM71CQ8NEG0 241 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 OR11H7Q8NGC8 314 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 OR4D9Q8NGE8 314 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 OR51Q1Q8NH59 317 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 LGALS14Q8TCE9 139 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 HGDQ93099 445 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 SPACA7Q96KW9 195 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 NMNAT3Q96T66 252 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 TCEAL2Q9H3H9 227 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-222ENST00000555774 C8orf33Q9H7E9 229 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-222ENST00000555774 PRODH2Q9UF12 536 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 MOKQ9UQ07 419 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 DTX4Q9Y2E6 619 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 AK6Q9Y3D8 172 aaKnown RBP12.35□□□□□ -0.43
SHMT2-222ENST00000555774 ADAM18Q9Y3Q7 739 aa12.35□□□□□ -0.43
SHMT2-222ENST00000555774 A0A0A6YYC8 382 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-222ENST00000555774 TCRBV21S2A2A0A5A6 115 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 EPOPA6NHQ4 379 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 I3L1I5 382 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-222ENST00000555774 HCRTR1O43613 425 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 SULT1B1O43704 296 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 SELENOFO60613 162 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 NSA2O95478 260 aaKnown RBP12.34□□□□□ -0.43
SHMT2-222ENST00000555774 BIKQ13323 160 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 SNTB2Q13425 540 aaKnown RBP12.34□□□□□ -0.43
SHMT2-222ENST00000555774 ZNF267Q14586 743 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-222ENST00000555774 GSG1Q2KHT4 349 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 DEFB110Q30KQ9 67 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 ZNF527Q8NB42 609 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 ZNF431Q8TF32 576 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-222ENST00000555774 RBCK1Q9BYM8 510 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 TTTY10Q9BZA0 68 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 NOX4Q9NPH5 578 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 GPR27Q9NS67 375 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 B3GNT2Q9NY97 397 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 SLCO1C1Q9NYB5 712 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 HCN3Q9P1Z3 774 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 OR10H1Q9Y4A9 318 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 PIAS3Q9Y6X2 628 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 A0A1W2PPK0 400 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 OR6C68A6NDL8 312 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 GNB5O14775 395 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 TPPPO94811 219 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 TACSTD2P09758 323 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 GABRG2P18507 467 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 EN2P19622 333 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-222ENST00000555774 POU3F3P20264 500 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-222ENST00000555774 GRK6P43250 576 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 AP3S2P59780 193 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 SNRPD2P62316 118 aaKnown RBP12.34□□□□□ -0.43
SHMT2-222ENST00000555774 MRPS10P82664 201 aaKnown RBP12.34□□□□□ -0.43
SHMT2-222ENST00000555774 KLHL26Q53HC5 615 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 ZNF684Q5T5D7 378 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 WBP2NLQ6ICG8 309 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 OR51L1Q8NGJ5 315 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms