RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 OR6T1Q8NGN1 323 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 DNAJA4Q8WW22 397 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-219ENST00000555563 S100PBPQ96BU1 408 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 ZNF583Q96ND8 569 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 TAPBPLQ9BX59 468 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 MYLK2Q9H1R3 596 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 GPR52Q9Y2T5 361 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 NOSIPQ9Y314 301 aaKnown RBP12.15□□□□□ -0.46
SHMT2-219ENST00000555563 FLVCR1Q9Y5Y0 555 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 OTOGQ6ZRI0 2925 aa12.15□□□□□ -0.46
SHMT2-219ENST00000555563 CSMD2Q7Z408 3487 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 FREM1Q5H8C1 2179 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 FTCDNL1E5RQL4 147 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 IGHV3-9P01782 118 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 COX5AP20674 150 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 PTNP21246 168 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 IL32P24001 234 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 DNAJA1P31689 397 aaKnown RBP12.14□□□□□ -0.47
SHMT2-219ENST00000555563 RPS5P46782 204 aaKnown RBP12.14□□□□□ -0.47
SHMT2-219ENST00000555563 P2RY4P51582 365 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 P2RY6Q15077 328 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 SFRP5Q5T4F7 317 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 FAM91A1Q658Y4 838 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 ULK3Q6PHR2 472 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 CASP12Q6UXS9 341 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 ARPINQ7Z6K5 226 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 CPLX4Q7Z7G2 160 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 P3H2Q8IVL5 708 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 STEAP2Q8NFT2 490 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 OR2T12Q8NG77 320 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 OR9K2Q8NGE7 335 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 VANGL1Q8TAA9 524 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-219ENST00000555563 RNF217Q8TC41 542 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 SLC26A7Q8TE54 656 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 KISS1RQ969F8 398 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-219ENST00000555563 APH1AQ96BI3 265 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 KTI12Q96EK9 354 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-219ENST00000555563 MCHR1Q99705 422 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 OR10A4Q9H209 315 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 LIME1Q9H400 295 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 TMEM27Q9HBJ8 222 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 CMTM6Q9NX76 183 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 SELENONQ9NZV5 590 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 GMPR2Q9P2T1 348 aaKnown RBP12.14□□□□□ -0.47
SHMT2-219ENST00000555563 SLC9A8Q9Y2E8 581 aa12.14□□□□□ -0.47
SHMT2-219ENST00000555563 A0A087WUJ7 227 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 FMO6PO60774 539 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 LYZL6O75951 148 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 CNOT4O95628 575 aaKnown RBP12.13□□□□□ -0.47
SHMT2-219ENST00000555563 IGHV1-2P23083 117 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 NUDT2P50583 147 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 CDH12P55289 794 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 ITGADQ13349 1161 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 VEZF1Q14119 521 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 SWT1Q5T5J6 900 aaKnown RBP12.13□□□□□ -0.47
SHMT2-219ENST00000555563 FBXW9Q5XUX1 488 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 GPAT4Q86UL3 456 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 TSPYL5Q86VY4 417 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-219ENST00000555563 WFDC8Q8IUA0 241 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 RBM45Q8IUH3 476 aaKnown RBP12.13□□□□□ -0.47
SHMT2-219ENST00000555563 UBE2J2Q8N2K1 259 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 MFSD8Q8NHS3 518 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 RASSF5Q8WWW0 418 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 SLC38A4Q969I6 547 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 SLC25A36Q96CQ1 311 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 PIK3IP1Q96FE7 263 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 SLC47A1Q96FL8 570 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 HS3ST6Q96QI5 342 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 SF3B5Q9BWJ5 86 aaKnown RBP12.13□□□□□ -0.47
SHMT2-219ENST00000555563 PLEKHF2Q9H8W4 249 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 SEC14L4Q9UDX3 406 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 MALT1Q9UDY8 824 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 ITGB1BP2Q9UKP3 347 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 PDZD2O15018 2839 aa12.13□□□□□ -0.47
SHMT2-219ENST00000555563 CPSF4LA6NMK7 179 aaKnown RBP12.12□□□□□ -0.47
SHMT2-219ENST00000555563 FZD7O75084 574 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 MRPL33O75394 65 aaKnown RBP12.12□□□□□ -0.47
SHMT2-219ENST00000555563 TNFRSF1BP20333 461 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 LOXP28300 417 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-219ENST00000555563 GTF2E2P29084 291 aaKnown RBP12.12□□□□□ -0.47
SHMT2-219ENST00000555563 SLC7A2P52569 658 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 LRRC23Q53EV4 343 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-219ENST00000555563 ENTPD8Q5MY95 495 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 FAM69AQ5T7M9 428 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 C8orf82Q6P1X6 216 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-219ENST00000555563 ZNF613Q6PF04 617 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 C5orf46Q6UWT4 87 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 PAMR1Q6UXH9 720 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 BHLHA15Q7RTS1 189 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-219ENST00000555563 SLC15A3Q8IY34 581 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 MICU2Q8IYU8 434 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 PROX1Q92786 737 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 TAAR8Q969N4 342 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 TMEM45BQ96B21 275 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 ZNF385AQ96PM9 386 aaKnown RBP12.12□□□□□ -0.47
SHMT2-219ENST00000555563 HDHD5Q9BXW7 423 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 EFCAB1Q9HAE3 211 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 ST6GALNAC2Q9UJ37 374 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 PLEKHA6Q9Y2H5 1048 aa12.12□□□□□ -0.47
SHMT2-219ENST00000555563 POLQO75417 2590 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms