RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 MARCH3Q86UD3 253 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 COX18Q8N8Q8 333 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 SLC16A11Q8NCK7 471 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 OR2M3Q8NG83 312 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 TMIGD2Q96BF3 282 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 C16orf58Q96GQ5 468 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 ALPK1Q96QP1 1244 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 TM9SF2Q99805 663 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 YIPF4Q9BSR8 244 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 RSPO3Q9BXY4 272 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-214ENST00000554604 ZNF556Q9HAH1 456 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 MED11Q9P086 117 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 KCNN3Q9UGI6 736 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 TMCC3Q9ULS5 477 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 SLC9A8Q9Y2E8 581 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 TPRKBQ9Y3C4 175 aa11.21□□□□□ -0.61
SHMT2-214ENST00000554604 OTOGQ6ZRI0 2925 aa11.21□□□□□ -0.62
SHMT2-214ENST00000554604 TEP1Q99973 2627 aaKnown RBP11.21□□□□□ -0.62
SHMT2-214ENST00000554604 CSMD2Q7Z408 3487 aa11.21□□□□□ -0.62
SHMT2-214ENST00000554604 MBD3L4A6NDZ8 208 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-214ENST00000554604 MBD3L3A6NE82 208 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-214ENST00000554604 MBD3L5A6NJ08 208 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-214ENST00000554604 EEF1E1-BLOC1S5C9J1V9 151 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 FFAR1O14842 300 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 EEF1E1O43324 174 aaKnown RBP11.2□□□□□ -0.62
SHMT2-214ENST00000554604 LGI1O95970 557 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 ADAP00813 363 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 H1F0P07305 194 aaKnown RBP11.2□□□□□ -0.62
SHMT2-214ENST00000554604 TMIGD3P0DMS9 266 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-214ENST00000554604 HK1P19367 917 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 CTSSP25774 331 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 OPRM1P35372 400 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 GGT2P36268 569 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 LHX2P50458 406 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 ZNF136P52737 540 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 CSNK2BP67870 215 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 DUSP5Q16690 384 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 GPAT3Q53EU6 434 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 ZNF770Q6IQ21 691 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-214ENST00000554604 FIGNL1Q6PIW4 674 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 DHRS4L2Q6PKH6 230 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 ARSKQ6UWY0 536 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 TMEM200AQ86VY9 491 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 GRAMD2AQ8IUY3 354 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 UBQLNLQ8IYU4 475 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 SPARTQ8N0X7 666 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 LINC00471Q8N535 108 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 FADS6Q8N9I5 356 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 RELL2Q8NC24 303 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-214ENST00000554604 OR52J3Q8NH60 311 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 MBD3L2Q8NHZ7 208 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-214ENST00000554604 ZNF420Q8TAQ5 688 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-214ENST00000554604 ADAMTS15Q8TE58 950 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 ZFAND2BQ8WV99 257 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 HOXB13Q92826 284 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-214ENST00000554604 OTUB1Q96FW1 271 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-214ENST00000554604 FUZQ9BT04 418 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 SLC38A1Q9H2H9 487 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 DUSP21Q9H596 190 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 HHATLQ9HCP6 504 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 CCNB1IP1Q9NPC3 277 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 RLIMQ9NVW2 624 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 SCN3BQ9NY72 215 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 MGAT4BQ9UQ53 548 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 PCDHGB1Q9Y5G3 927 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 SNX5Q9Y5X3 404 aa11.2□□□□□ -0.62
SHMT2-214ENST00000554604 CLCA1A8K7I4 914 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 B4DXG7 233 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 NDUFB5O43674 189 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 GMFGO60234 142 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 KCNK2O95069 426 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 IGKV1D-16P01601 117 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 HTR1AP08908 422 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 ACP2P11117 423 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 PEPDP12955 493 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 ZNF708P17019 499 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 POU3F2P20265 443 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-214ENST00000554604 PEX19P40855 299 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 MAP3K8P41279 467 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 KIR2DL3P43628 341 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 AGFG1P52594 562 aaKnown RBP11.19□□□□□ -0.62
SHMT2-214ENST00000554604 DLX5P56178 289 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 CLDN18P56856 261 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 KRTAP10-9P60411 292 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 POU6F2P78424 691 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-214ENST00000554604 PMS2P3Q13401 168 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 LSAMPQ13449 338 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 RAB39AQ14964 217 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 BCL2A1Q16548 175 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 ARHGAP11BQ3KRB8 267 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 DEF8Q6ZN54 512 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 C16orf62Q7Z3J2 963 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 P4HA3Q7Z4N8 544 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 DEPDC4Q8N2C3 294 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 MEIOBQ8N635 442 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 C9orf106Q8NAJ2 232 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 OR9Q2Q8NGE9 314 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 OR4D11Q8NGI4 311 aa11.19□□□□□ -0.62
SHMT2-214ENST00000554604 VANGL1Q8TAA9 524 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-214ENST00000554604 CNIH3Q8TBE1 160 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms