RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 HOXC5Q00444 222 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 CEACAM7Q14002 265 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 KRT72Q14CN4 511 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 POU4F3Q15319 338 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 C16orf89Q6UX73 402 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 Q6ZT83 130 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 COMTD1Q86VU5 262 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 TMEM200AQ86VY9 491 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 ZNF100Q8IYN0 542 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 PGAM4Q8N0Y7 254 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 SCAIQ8N9R8 606 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 CCDC197Q8NCU1 140 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 STEAP2Q8NFT2 490 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 OR6T1Q8NGN1 323 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 TMEM45BQ96B21 275 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 KCTD14Q9BQ13 255 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 MED18Q9BUE0 208 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 C12orf49Q9H741 205 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 CMTM6Q9NX76 183 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 FAM53CQ9NYF3 392 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 C6orf203Q9P0P8 240 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 ING1Q9UK53 422 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 B3GALT5Q9Y2C3 310 aa12.78□□□□□ -0.36
CCDC88C-207ENST00000554051 CCT8L1PA6NM43 557 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 NME4O00746 187 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 MRPL33O75394 65 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 OR5F1O95221 314 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 MT-ATP6P00846 226 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 IL32P24001 234 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 GSK3BP49841 420 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 SLC17A1Q14916 467 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 EXOC3L2Q2M3D2 409 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 CYBRD1Q53TN4 286 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 ENTPD8Q5MY95 495 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 ABHD12BQ7Z5M8 362 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 GABRG1Q8N1C3 465 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 RNF217Q8TC41 542 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 ADAMTS16Q8TE57 1224 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 GEMIN6Q8WXD5 167 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 ZNF300Q96RE9 604 aaPredicted RBP12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 ASPNQ9BXN1 380 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 MALT1Q9UDY8 824 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 RPS6KA6Q9UK32 745 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 SH3GLB1Q9Y371 365 aa12.77□□□□□ -0.37
CCDC88C-207ENST00000554051 HTR3EA5X5Y0 456 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 FTCDNL1E5RQL4 147 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 CXCR6O00574 342 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 PRF1P14222 555 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 CCKARP32238 428 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 RBM34P42696 430 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 CRYBA2P53672 197 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 CDH12P55289 794 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 SELENOWP63302 87 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 FAM27E3Q08E93 113 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 BNIP2Q12982 314 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 SAMD4BQ5PRF9 694 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 FBXW10Q5XX13 1052 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 TMEM225Q6GV28 225 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 CASP12Q6UXS9 341 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 STAC2Q6ZMT1 411 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 NUFIP2Q7Z417 695 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 CARM1Q86X55 608 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 OR9K2Q8NGE7 335 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 VANGL1Q8TAA9 524 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 KISS1RQ969F8 398 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 PTDSS2Q9BVG9 487 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 KLHL4Q9C0H6 718 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 ADA2Q9NZK5 511 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 FLVCR1Q9Y5Y0 555 aa12.76□□□□□ -0.37
CCDC88C-207ENST00000554051 CPSF4LA6NMK7 179 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 CTAG2O75638 210 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 AKR7A3O95154 331 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 IGF2P01344 180 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 IFNW1P05000 195 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 COX5AP20674 150 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 CRYGSP22914 178 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 RPS5P46782 204 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 NR1H2P55055 460 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 TAS2R41P59536 307 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 MXRA7P84157 204 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 EGR4Q05215 589 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 ITGADQ13349 1161 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 NPTX1Q15818 432 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 FBXW9Q5XUX1 488 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 TTC33Q6PID6 262 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 GPAT4Q86UL3 456 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 P2RY8Q86VZ1 359 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 ARHGAP24Q8N264 748 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 TMEM99Q8N816 258 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 POMGNT2Q8NAT1 580 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 FAM162AQ96A26 154 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 KTI12Q96EK9 354 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 LURAP1Q96LR2 239 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 PRRC1Q96M27 445 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 ZNF426Q9BUY5 554 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 RSPO3Q9BXY4 272 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 ACTR6Q9GZN1 396 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 CLEC4MQ9H2X3 399 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 NGBQ9NPG2 151 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 RASSF1Q9NS23 344 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms