RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 ZNF48Q96MX3 618 aaPredicted RBP11.81□□□□□ -0.52
PRPF39-204ENST00000553605 TMEM237Q96Q45 408 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 ALKBH3Q96Q83 286 aaPredicted RBP11.81□□□□□ -0.52
PRPF39-204ENST00000553605 SDF2Q99470 211 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 SYT3Q9BQG1 590 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 ERP44Q9BS26 406 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 SF3B5Q9BWJ5 86 aaKnown RBP11.81□□□□□ -0.52
PRPF39-204ENST00000553605 NMUR2Q9GZQ4 415 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 PLEK2Q9NYT0 353 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 TESQ9UGI8 421 aaKnown RBP11.81□□□□□ -0.52
PRPF39-204ENST00000553605 KCNE5Q9UJ90 142 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 MID2Q9UJV3 735 aa11.81□□□□□ -0.52
PRPF39-204ENST00000553605 FAF1Q9UNN5 650 aaPredicted RBP11.81□□□□□ -0.52
PRPF39-204ENST00000553605 A0A1B0GUS0 222 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 SCAMP2O15127 329 aaKnown RBP11.8□□□□□ -0.52
PRPF39-204ENST00000553605 SEC22BO75396 215 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 RSL1D1O76021 490 aaKnown RBP11.8□□□□□ -0.52
PRPF39-204ENST00000553605 IGHV2-5P01817 119 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 IMPDH1P20839 514 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 FOXA1P55317 472 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 LCP2Q13094 533 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 MAD2L1BPQ15013 274 aaPredicted RBP11.8□□□□□ -0.52
PRPF39-204ENST00000553605 KIAA0040Q15053 153 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 GPR68Q15743 365 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 ZNF141Q15928 474 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 ATP6AP1LQ52LC2 224 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 BRICD5Q6PL45 260 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 RHOUQ7L0Q8 258 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 EIF3MQ7L2H7 374 aaKnown RBP11.8□□□□□ -0.52
PRPF39-204ENST00000553605 LINGO2Q7L985 606 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 TRIM46Q7Z4K8 759 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 CREG2Q8IUH2 290 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 PMM1Q92871 262 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 DDIT4LQ96D03 193 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 CITED1Q99966 193 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 RBM4BQ9BQ04 359 aaKnown RBP11.8□□□□□ -0.52
PRPF39-204ENST00000553605 PIF1Q9H611 641 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 ZNF385DQ9H6B1 395 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 PCDHGB4Q9UN71 923 aa11.8□□□□□ -0.52
PRPF39-204ENST00000553605 TMEM229AB2RXF0 380 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 CDC14BO60729 498 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 UPK3AO75631 287 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 KRT16P08779 473 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 NAT2P11245 290 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 TAC1P20366 129 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 RYKP34925 604 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 RAD52P43351 418 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 CCT3P49368 545 aaKnown RBP11.79□□□□□ -0.52
PRPF39-204ENST00000553605 SELENOPP49908 381 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 PLTPP55058 493 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 SH3BGRP55822 239 aaPredicted RBP11.79□□□□□ -0.52
PRPF39-204ENST00000553605 ARMCX4Q5H9R4 360 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 C16orf87Q6PH81 154 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 SPATC1Q76KD6 591 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 GPAT4Q86UL3 456 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 RETREG3Q86VR2 466 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 LRP11Q86VZ4 500 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 LRRC8AQ8IWT6 810 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 TMEM99Q8N816 258 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 RAB8BQ92930 207 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 POP5Q969H6 163 aaKnown RBP11.79□□□□□ -0.52
PRPF39-204ENST00000553605 SERHL2Q9H4I8 314 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 BEX1Q9HBH7 125 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 MID1IP1Q9NPA3 183 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 RRAGDQ9NQL2 400 aaPredicted RBP11.79□□□□□ -0.52
PRPF39-204ENST00000553605 NOX1Q9Y5S8 564 aa11.79□□□□□ -0.52
PRPF39-204ENST00000553605 CENPVL1A0A0U1RR11 272 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 ZNF503-AS2A6NEH8 195 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 PIN1P1O15428 100 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 UGT2B17O75795 530 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 GLRXP35754 106 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 PGM1P36871 562 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 MAGEB1P43366 347 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 LCN2P80188 198 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 TP53BP2Q13625 1128 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 PDE7AQ13946 482 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 TMEM225Q6GV28 225 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 MDP1Q86V88 176 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 LSRQ86X29 649 aaPredicted RBP11.78□□□□□ -0.52
PRPF39-204ENST00000553605 WDFY1Q8IWB7 410 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 METTL2AQ96IZ6 378 aaKnown RBP11.78□□□□□ -0.52
PRPF39-204ENST00000553605 TSSK3Q96PN8 268 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 OR7D2Q96RA2 312 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 GPATCH2Q9NW75 528 aa11.78□□□□□ -0.52
PRPF39-204ENST00000553605 MYEF2Q9P2K5 600 aaKnown RBP11.78□□□□□ -0.52
PRPF39-204ENST00000553605 TMED7-TICAM2A0A0A6YYA0 188 aa11.77□□□□□ -0.53
PRPF39-204ENST00000553605 TMEM72A0PK05 275 aa11.77□□□□□ -0.53
PRPF39-204ENST00000553605 ZNF208O43345 1280 aa11.77□□□□□ -0.53
PRPF39-204ENST00000553605 FCMRO60667 390 aa11.77□□□□□ -0.53
PRPF39-204ENST00000553605 STX11O75558 287 aa11.77□□□□□ -0.53
PRPF39-204ENST00000553605 AKR7A3O95154 331 aa11.77□□□□□ -0.53
PRPF39-204ENST00000553605 BCKDHAP12694 445 aa11.77□□□□□ -0.53
PRPF39-204ENST00000553605 HTR3AP46098 478 aa11.77□□□□□ -0.53
PRPF39-204ENST00000553605 IDH2P48735 452 aaKnown RBP11.77□□□□□ -0.53
PRPF39-204ENST00000553605 ATP4BP51164 291 aa11.77□□□□□ -0.53
PRPF39-204ENST00000553605 ARF1P84077 181 aaKnown RBP11.77□□□□□ -0.53
PRPF39-204ENST00000553605 ROR2Q01974 943 aaKnown RBP11.77□□□□□ -0.53
PRPF39-204ENST00000553605 KLF17Q5JT82 389 aaPredicted RBP11.77□□□□□ -0.53
PRPF39-204ENST00000553605 ZNF362Q5T0B9 420 aaPredicted RBP11.77□□□□□ -0.53
PRPF39-204ENST00000553605 ASPHD2Q6ICH7 369 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms