RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 SPOCK1Q08629 439 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 GABRA6Q16445 453 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 PAGE3Q5JUK9 113 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 TSPO2Q5TGU0 170 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 OR7E24Q6IFN5 339 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 BLOC1S3Q6QNY0 202 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 TMEM108Q6UXF1 575 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 MSRB3Q8IXL7 192 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 OR9K2Q8NGE7 335 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 C3orf49Q96BT1 292 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 TRMT61AQ96FX7 289 aaKnown RBP14.36□□□□□ -0.11
VPS29-207ENST00000549970 MUS81Q96NY9 551 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 ZNF385AQ96PM9 386 aaKnown RBP14.36□□□□□ -0.11
VPS29-207ENST00000549970 CCDC28BQ9BUN5 200 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 C1QTNF6Q9BXI9 259 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 ALG2Q9H553 416 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 CSPG4Q6UVK1 2322 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 ZANQ9Y493 2812 aa14.36□□□□□ -0.11
VPS29-207ENST00000549970 TLN2Q9Y4G6 2542 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 M0R1B8 84 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 PDLIM1O00151 329 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 PTNP21246 168 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 VEZF1Q14119 521 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 CLEC12BQ2HXU8 276 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 LRIF1Q5T3J3 769 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 GCNT6Q5T4J0 391 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 C1orf140Q5VVS0 124 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 PRAMEF8Q5VWM4 474 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 PRAMEF7Q5VXH5 474 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 TMEM225Q6GV28 225 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 SLC22A25Q6T423 547 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 KLHL17Q6TDP4 642 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 AAED1Q7RTV5 226 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 C10orf111Q8N326 155 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 ZIC4Q8N9L1 334 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 NFKBIDQ8NI38 313 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 TMEM45BQ96B21 275 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 SF3B5Q9BWJ5 86 aaKnown RBP14.35□□□□□ -0.11
VPS29-207ENST00000549970 FAIMQ9NVQ4 179 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 VAPAQ9P0L0 249 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 DCTN4Q9UJW0 460 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 POU2F3Q9UKI9 436 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 PRDM4Q9UKN5 801 aa14.35□□□□□ -0.11
VPS29-207ENST00000549970 ANK3Q12955 4377 aaKnown RBP14.35□□□□□ -0.11
VPS29-207ENST00000549970 FN1P02751 2386 aaKnown RBP14.35□□□□□ -0.11
VPS29-207ENST00000549970 PLCE1Q9P212 2302 aa14.34□□□□□ -0.11
VPS29-207ENST00000549970 TMEM229AB2RXF0 380 aa14.34□□□□□ -0.11
VPS29-207ENST00000549970 AHSA1O95433 338 aa14.34□□□□□ -0.11
VPS29-207ENST00000549970 ARAFP10398 606 aa14.34□□□□□ -0.11
VPS29-207ENST00000549970 CDH2P19022 906 aaPredicted RBP14.34□□□□□ -0.11
VPS29-207ENST00000549970 PTAFRP25105 342 aa14.34□□□□□ -0.11
VPS29-207ENST00000549970 CD40P25942 277 aa14.34□□□□□ -0.11
VPS29-207ENST00000549970 TNK1Q13470 666 aa14.34□□□□□ -0.11
VPS29-207ENST00000549970 AGKQ53H12 422 aa14.34□□□□□ -0.11
VPS29-207ENST00000549970 RADILQ96JH8 1075 aa14.34□□□□□ -0.11
VPS29-207ENST00000549970 TRAF4Q9BUZ4 470 aaPredicted RBP14.34□□□□□ -0.11
VPS29-207ENST00000549970 AMBRA1Q9C0C7 1298 aa14.34□□□□□ -0.11
VPS29-207ENST00000549970 SLCO5A1Q9H2Y9 848 aa14.34□□□□□ -0.11
VPS29-207ENST00000549970 MGAT4BQ9UQ53 548 aa14.34□□□□□ -0.11
VPS29-207ENST00000549970 HEATR1Q9H583 2144 aaKnown RBP14.33□□□□□ -0.11
VPS29-207ENST00000549970 NPIPB7O75200 414 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 NDUFS7O75251 213 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 CD8AP01732 235 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 ETS2P15036 469 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 PPIBP23284 216 aaKnown RBP14.33□□□□□ -0.12
VPS29-207ENST00000549970 PCSK6P29122 969 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 MPGP29372 298 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 P2RY4P51582 365 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 SLC25A3Q00325 362 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 CDK6Q00534 326 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 TGFBR3Q03167 851 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 SQLEQ14534 574 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 DTX2Q86UW9 622 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 WDR31Q8NA23 367 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 POMGNT2Q8NAT1 580 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 C1orf162Q8NEQ5 155 aaPredicted RBP14.33□□□□□ -0.12
VPS29-207ENST00000549970 STK35Q8TDR2 534 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 SLC25A36Q96CQ1 311 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 THOC1Q96FV9 657 aaKnown RBP14.33□□□□□ -0.12
VPS29-207ENST00000549970 IKZF5Q9H5V7 419 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 SLC52A3Q9NQ40 469 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 SLC17A5Q9NRA2 495 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 INTS9Q9NV88 658 aaKnown RBP14.33□□□□□ -0.12
VPS29-207ENST00000549970 RPS6KB2Q9UBS0 482 aa14.33□□□□□ -0.12
VPS29-207ENST00000549970 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.33□□□□□ -0.12
VPS29-207ENST00000549970 TRBV5-3A0A0A0MS03 114 aa14.32□□□□□ -0.12
VPS29-207ENST00000549970 ELOA3DA6NLF2 546 aaPredicted RBP14.32□□□□□ -0.12
VPS29-207ENST00000549970 E7EQL1 145 aa14.32□□□□□ -0.12
VPS29-207ENST00000549970 RNF223E7ERA6 249 aa14.32□□□□□ -0.12
VPS29-207ENST00000549970 KRT33AO76009 404 aa14.32□□□□□ -0.12
VPS29-207ENST00000549970 IGHV4-39P01824 125 aa14.32□□□□□ -0.12
VPS29-207ENST00000549970 GTF2E2P29084 291 aaKnown RBP14.32□□□□□ -0.12
VPS29-207ENST00000549970 PRKAR1BP31321 381 aa14.32□□□□□ -0.12
VPS29-207ENST00000549970 ACVR1BP36896 505 aa14.32□□□□□ -0.12
VPS29-207ENST00000549970 RPS5P46782 204 aaKnown RBP14.32□□□□□ -0.12
VPS29-207ENST00000549970 SELENOPP49908 381 aa14.32□□□□□ -0.12
VPS29-207ENST00000549970 ATP4BP51164 291 aa14.32□□□□□ -0.12
VPS29-207ENST00000549970 EGR4Q05215 589 aa14.32□□□□□ -0.12
VPS29-207ENST00000549970 ETFDHQ16134 617 aa14.32□□□□□ -0.12
VPS29-207ENST00000549970 ELOA3BQ3SY89 546 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms