RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ACOT4Q8N9L9 421 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 ZNF740Q8NDX6 193 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 SDR9C7Q8NEX9 313 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 OR2AP1Q8NGE2 309 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 AKR7LQ8NHP1 331 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 OR1E3Q8WZA6 343 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 DCUN1D4Q92564 292 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 PAGE5Q96GU1 130 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 OXGR1Q96P68 337 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 TSG101Q99816 390 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 TCHPQ9BT92 498 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 OR51J1Q9H342 316 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 SUDS3Q9H7L9 328 aaPredicted RBP2.94□□□□□ -1.94
VPS29-205ENST00000548539 FOLH1BQ9HBA9 442 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 DCDC2Q9UHG0 476 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 ZNF639Q9UID6 485 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 TMCO1Q9UM00 188 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 KCNIP3Q9Y2W7 256 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 V9GY05 133 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 A0A0J9YXY3 114 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 GOLGA8SH3BPF8 625 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 HAS3O00219 553 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 HSD17B6O14756 317 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 TOM1O60784 492 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 GAPDHP04406 335 aaKnown RBP2.93□□□□□ -1.94
VPS29-205ENST00000548539 ETS2P15036 469 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 ZNF19P17023 458 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 CXCR2P25025 360 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 RGRP47804 291 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 CAV2P51636 162 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 GPM6AP51674 278 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 SELENOTP62341 195 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 OGDHQ02218 1023 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 KLF17Q5JT82 389 aaPredicted RBP2.93□□□□□ -1.94
VPS29-205ENST00000548539 C1orf146Q5VVC0 180 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 TIGD3Q6B0B8 471 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 SCARA5Q6ZMJ2 495 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 Q6ZN92 141 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 C19orf35Q6ZS72 473 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 C11orf53Q8IXP5 236 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 RDH10Q8IZV5 341 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 FAM83FQ8NEG4 500 aaPredicted RBP2.93□□□□□ -1.94
VPS29-205ENST00000548539 RPUSD4Q96CM3 377 aaKnown RBP2.93□□□□□ -1.94
VPS29-205ENST00000548539 TUBGCP3Q96CW5 907 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 CNDP1Q96KN2 507 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 B3GALT6Q96L58 329 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 C12orf42Q96LP6 360 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 ZNF641Q96N77 438 aaPredicted RBP2.93□□□□□ -1.94
VPS29-205ENST00000548539 TECTBQ96PL2 329 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 PANX2Q96RD6 677 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 ARHGDIGQ99819 225 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 POLR2J2Q9GZM3 115 aaKnown RBP2.93□□□□□ -1.94
VPS29-205ENST00000548539 ACTR6Q9GZN1 396 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 POLR2J3Q9H1A7 115 aaKnown RBP2.93□□□□□ -1.94
VPS29-205ENST00000548539 PPA2Q9H2U2 334 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 NARFLQ9H6Q4 476 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 AZI2Q9H6S1 392 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 NMRAL1Q9HBL8 299 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 PRR34Q9NV39 138 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 SLC7A8Q9UHI5 535 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 KIF25Q9UIL4 384 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 BTNL2Q9UIR0 455 aa2.93□□□□□ -1.94
VPS29-205ENST00000548539 IGHV3OR16-13A0A075B7E8 117 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 IGHV1OR21-1A0A087WYE8 117 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 FAM231BA6NCW3 169 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 ZNF780AO75290 641 aaPredicted RBP2.92□□□□□ -1.94
VPS29-205ENST00000548539 MMP23AO75900 390 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 KLK3P07288 261 aaPredicted RBP2.92□□□□□ -1.94
VPS29-205ENST00000548539 UQCRFS1P1P0C7P4 283 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 ATP1B2P14415 290 aaPredicted RBP2.92□□□□□ -1.94
VPS29-205ENST00000548539 MX1P20591 662 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 CD1CP29017 333 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 RFC4P35249 363 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 DDOSTP39656 456 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 CRYBB1P53674 252 aaPredicted RBP2.92□□□□□ -1.94
VPS29-205ENST00000548539 APOC4P55056 127 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 CDH4P55283 916 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 RIPPLY3P57055 190 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 RPL23AP62750 156 aaKnown RBP2.92□□□□□ -1.94
VPS29-205ENST00000548539 ASPHQ12797 758 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 OR5I1Q13606 314 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 MICBQ29980 383 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 PARP15Q460N3 678 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 CTSL3PQ5NE16 218 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 TAS2R42Q7RTR8 314 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 TGIF2LXQ8IUE1 241 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 C6orf223Q8N319 242 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 OR2L5Q8NG80 312 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 OR1L6Q8NGR2 347 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 BRSK1Q8TDC3 778 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 RNF139Q8WU17 664 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 C7orf33Q8WU49 177 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 CHRDL1Q9BU40 450 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 ETNK2Q9NVF9 386 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 AIG1Q9NVV5 245 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 NPTNQ9Y639 398 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 SH3TC1Q8TE82 1336 aa2.92□□□□□ -1.94
VPS29-205ENST00000548539 ATP10AO60312 1499 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 FAM240BA0A1B0GVZ2 78 aa2.91□□□□□ -1.94
VPS29-205ENST00000548539 XKRY2A2RUG3 117 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms