RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 GPANK1O95872 356 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 RPS17P08708 135 aaKnown RBP13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 SBK3P0C264 359 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 TFPIP10646 304 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 VPS26BQ4G0F5 336 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 GGTA1PQ4G0N0 100 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 SYT14P1Q58G82 188 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 KPRPQ5T749 579 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 C1QTNF12Q5T7M4 302 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 OLFML2AQ68BL7 652 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 KRT80Q6KB66 452 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 OR1K1Q8NGR3 316 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 PIGXQ8TBF5 258 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 GIMAP5Q96F15 307 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 ARL5BQ96KC2 179 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 RSPO3Q9BXY4 272 aaPredicted RBP13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 OBP2BQ9NPH6 170 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 PLEK2Q9NYT0 353 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 ZNF225Q9UK10 706 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 FLVCR1Q9Y5Y0 555 aa13.15□□□□□ -0.3
CLSTN3-216ENST00000545663 TMEM120BA0PK00 339 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 FAM181BA6NEQ2 426 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 G3V2L1 256 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 M0R233 179 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 ETV2O00321 342 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 SUPT7LO94864 414 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 IGHV2-5P01817 119 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 SELEP16581 610 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 CCR4P51679 360 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 SUMO3P55854 103 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 RAG2P55895 527 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 BTKQ06187 659 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 HSPB3Q12988 150 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 SNTB2Q13425 540 aaKnown RBP13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 TAF9Q16594 264 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 ZNF678Q5SXM1 525 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 HHATQ5VTY9 493 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 CCBE1Q6UXH8 406 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 MTERF4Q7Z6M4 381 aaKnown RBP13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 LRP11Q86VZ4 500 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 WDFY1Q8IWB7 410 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 ARFGAP2Q8N6H7 521 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 TMCO5AQ8N6Q1 288 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 CDRT4Q8N9R6 151 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 OR5W2Q8NH69 310 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 BCL2L2Q92843 193 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 BOD1Q96IK1 185 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 SYT3Q9BQG1 590 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 ZNF416Q9BWM5 594 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 RASSF4Q9H2L5 321 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 PARPBPQ9NWS1 579 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 MYEF2Q9P2K5 600 aaKnown RBP13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 TESQ9UGI8 421 aaKnown RBP13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 SNX6Q9UNH7 406 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 CMAHPQ9Y471 501 aa13.14□□□□□ -0.31
CLSTN3-216ENST00000545663 MANBAO00462 879 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 SASH3O75995 380 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 BPGMP07738 259 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 ANXA4P09525 319 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 NAT2P11245 290 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 NEFHP12036 1026 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 NTSP30990 170 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 TIA1P31483 386 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 ETV4P43268 484 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 MAGEA8P43361 318 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 SERPINB4P48594 390 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 CDH13P55290 713 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 PKNOX1P55347 436 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 SESN3P58005 492 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 LOXL3P58215 753 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 UBE2NP61088 152 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 POU3F1Q03052 451 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 CLCQ05315 142 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 MERTKQ12866 999 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 LCP2Q13094 533 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 DAG1Q14118 895 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 ATP6AP1LQ52LC2 224 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 ARMCX4Q5H9R4 360 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 NUDCD3Q8IVD9 361 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 COX18Q8N8Q8 333 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 DEFB108BQ8NET1 73 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 ZNF483Q8TF39 744 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 ARL8AQ96BM9 186 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 AURKBQ96GD4 344 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 THUMPD3Q9BV44 507 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 ACPTQ9BZG2 426 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 OR11A1Q9GZK7 315 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 MS4A5Q9H3V2 200 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 TMEM45AQ9NWC5 275 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 ZNF446Q9NWS9 450 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 TAS2R7Q9NYW3 318 aa13.13□□□□□ -0.31
CLSTN3-216ENST00000545663 IGHV3OR16-10A0A075B7F0 116 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 A0A1B0GUS0 222 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 MDFIC2A0A1B0GVS7 189 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 NPHS1O60500 1241 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 OR4F21O95013 312 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 GSNP06396 782 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 GATA3P23771 443 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 LCN1P31025 176 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 MAGEB1P43366 347 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms