RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 INPP5KQ9BT40 448 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 CACNG6Q9BXT2 260 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 BARX1Q9HBU1 254 aaPredicted RBP7.43□□□□□ -1.22
USP28-215ENST00000545608 SLC7A10Q9NS82 523 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 CBLN4Q9NTU7 201 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 FAIMQ9NVQ4 179 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 ASB6Q9NWX5 421 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 TAS2R16Q9NYV7 291 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 MALT1Q9UDY8 824 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 BTNL2Q9UIR0 455 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 HAO1Q9UJM8 370 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 MGAT4BQ9UQ53 548 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 TRAPPC4Q9Y296 219 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 TMED7Q9Y3B3 224 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 FLVCR1Q9Y5Y0 555 aa7.43□□□□□ -1.22
USP28-215ENST00000545608 DNHD1Q96M86 4753 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 RTTNQ86VV8 2226 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 FAM234BA2RU67 622 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 AGAP5A6NIR3 686 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 SDHDO14521 159 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 RGS16O15492 202 aaPredicted RBP7.42□□□□□ -1.22
USP28-215ENST00000545608 ZNF208O43345 1280 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 TLX2O43763 284 aaPredicted RBP7.42□□□□□ -1.22
USP28-215ENST00000545608 GSNP06396 782 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 TACR3P29371 465 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 HTR3AP46098 478 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 FABP6P51161 128 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 POLR2HP52434 150 aaKnown RBP7.42□□□□□ -1.22
USP28-215ENST00000545608 CLNS1AP54105 237 aaKnown RBP7.42□□□□□ -1.22
USP28-215ENST00000545608 SLC35A1P78382 337 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 HPCAP84074 193 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 SLC25A3Q00325 362 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 BST1Q10588 318 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 EPS8Q12929 822 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 STX3Q13277 289 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 SLC17A1Q14916 467 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 MAPK11Q15759 364 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 NRF1Q16656 503 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 DPY19L1Q2PZI1 675 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 TNFAIP8L3Q5GJ75 292 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 OGFOD2Q6N063 350 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 HMBOX1Q6NT76 420 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 WDR93Q6P2C0 686 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 KLHL17Q6TDP4 642 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 CASP12Q6UXS9 341 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 LRRC74BQ6ZQY2 392 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 ZNF621Q6ZSS3 439 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 HIPK1Q86Z02 1210 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 CMIPQ8IY22 773 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 LRRC34Q8IZ02 419 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 FBXL14Q8N1E6 418 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 MUC15Q8N387 334 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 MREGQ8N565 214 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 PNPT1Q8TCS8 783 aaKnown RBP7.42□□□□□ -1.22
USP28-215ENST00000545608 ADAD1Q96M93 576 aaKnown RBP7.42□□□□□ -1.22
USP28-215ENST00000545608 TRNT1Q96Q11 434 aaKnown RBP7.42□□□□□ -1.22
USP28-215ENST00000545608 PANX1Q96RD7 426 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 RHNO1Q9BSD3 238 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 AMBRA1Q9C0C7 1298 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 MTHFD2LQ9H903 347 aaPredicted RBP7.42□□□□□ -1.22
USP28-215ENST00000545608 MEAF6Q9HAF1 191 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 SSU72Q9NP77 194 aaKnown RBP7.42□□□□□ -1.22
USP28-215ENST00000545608 SLC17A5Q9NRA2 495 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 AIG1Q9NVV5 245 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 UPB1Q9UBR1 384 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 POU2F3Q9UKI9 436 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 PCDHB14Q9Y5E9 798 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 ATP23Q9Y6H3 246 aa7.42□□□□□ -1.22
USP28-215ENST00000545608 ZANQ9Y493 2812 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 CFAP73A6NFT4 308 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 A8MV72 311 aaPredicted RBP7.41□□□□□ -1.22
USP28-215ENST00000545608 FAAHO00519 579 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 TM9SF1O15321 606 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 EIF1BO60739 113 aaKnown RBP7.41□□□□□ -1.22
USP28-215ENST00000545608 SNUPNO95149 360 aaKnown RBP7.41□□□□□ -1.22
USP28-215ENST00000545608 PGRP06401 933 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 GKN3PP0CG01 181 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 NR2F1P10589 423 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 IL7RP16871 459 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 RPS4Y1P22090 263 aaKnown RBP7.41□□□□□ -1.22
USP28-215ENST00000545608 SLC1A3P43003 542 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 NUDT6P53370 316 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 CEACAM7Q14002 265 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 RAB35Q15286 201 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 MRPL2Q5T653 305 aaKnown RBP7.41□□□□□ -1.22
USP28-215ENST00000545608 OR7E24Q6IFN5 339 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 PAQR6Q6TCH4 344 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 VRK2Q86Y07 508 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 ZNF525Q8N782 197 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 TMEM99Q8N816 258 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 ZIC4Q8N9L1 334 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 WDR60Q8WVS4 1066 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 PMM1Q92871 262 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 DDIT4LQ96D03 193 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 ZNF385AQ96PM9 386 aaKnown RBP7.41□□□□□ -1.22
USP28-215ENST00000545608 OR52E6Q96RD3 313 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 NAA11Q9BSU3 229 aaPredicted RBP7.41□□□□□ -1.22
USP28-215ENST00000545608 PARD6BQ9BYG5 372 aa7.41□□□□□ -1.22
USP28-215ENST00000545608 WDR55Q9H6Y2 383 aaPredicted RBP7.41□□□□□ -1.22
USP28-215ENST00000545608 KCNK9Q9NPC2 374 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms