RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	CHP2	O43745	196 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	FGF9	P31371	208 aa	Predicted RBP	13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	AGFG1	P52594	562 aa	Known RBP	13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	SF3A2	Q15428	464 aa	Known RBP	13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	DEFB133	Q30KQ1	61 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	SLC25A35	Q3KQZ1	300 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	ZNF57	Q68EA5	555 aa	Predicted RBP	13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	KIAA0895L	Q68EN5	471 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	PRSS42	Q7Z5A4	293 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	ZNF655	Q8N720	491 aa	Predicted RBP	13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	BMPER	Q8N8U9	685 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	C16orf52	Q8NHV5	167 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	SMPDL3B	Q92485	455 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	STAC	Q99469	402 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	SOST	Q9BQB4	213 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	WAC	Q9BTA9	647 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	HEXA-AS1	Q9H8Q6	139 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	CMC2	Q9NRP2	79 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	OR10H1	Q9Y4A9	318 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	IER3IP1	Q9Y5U9	82 aa		13.56	□□□□□ -0.24
DDX55-209	ENST00000542286	WISP1	O95388	367 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	TF	P02787	698 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	TPO	P07202	933 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	SLC35E2	P0CK97	266 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	PSMB10	P40306	273 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	PPP3R1	P63098	170 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	FGFBP1	Q14512	234 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	GRK1	Q15835	563 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	ESPNL	Q6ZVH7	1005 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	ASB18	Q6ZVZ8	466 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	CDK20	Q8IZL9	346 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	ARHGEF39	Q8N4T4	335 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	FAM98A	Q8NCA5	519 aa	Known RBP	13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	LSM14A	Q8ND56	463 aa	Known RBP	13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	OR4C6	Q8NH72	309 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	LMX1A	Q8TE12	382 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	VSTM2L	Q96N03	204 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	TSSK2	Q96PF2	358 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	NRSN2	Q9GZP1	204 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	SEMA6C	Q9H3T2	930 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	SOHLH2	Q9NX45	425 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	ENTPD2	Q9Y5L3	495 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	PCNX3	Q9H6A9	2034 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	EML5	Q05BV3	1969 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286		A0A0A6YYJ9	748 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	IGHV5-51	A0A0C4DH38	117 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286		H3BUI4	141 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	PTP4A3	O75365	173 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	SBK2	P0C263	348 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	CT45A8	P0DMV1	189 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	CT45A9	P0DMV2	189 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	DRD5	P21918	477 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	OR1D4	P47884	311 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	CTAG1A	P78358	180 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	RAB30	Q15771	203 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	CT45A2	Q5DJT8	189 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	POMZP3	Q6PJE2	187 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	OR11H4	Q8NGC9	324 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	NR4A3	Q92570	626 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	RASD2	Q96D21	266 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	KLHDC7B	Q96G42	594 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	NMNAT3	Q96T66	252 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	KCNJ15	Q99712	375 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	DPCD	Q9BVM2	203 aa	Predicted RBP	13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	MED28	Q9H204	178 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	ZFP64	Q9NPA5	681 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286	HS3ST3A1	Q9Y663	406 aa		13.55	□□□□□ -0.24
DDX55-209	ENST00000542286		A0A1B0GVT2	93 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	FAM86C2P	A6NEL3	165 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	TFPI	P10646	304 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	CBLN3	Q6UW01	205 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	TMPRSS11F	Q6ZWK6	438 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	CEACAM19	Q7Z692	300 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	OR52N1	Q8NH53	320 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	CREB3L1	Q96BA8	519 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	ORAI3	Q9BRQ5	295 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	MED17	Q9NVC6	651 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	ZNF222	Q9UK12	451 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	CA14	Q9ULX7	337 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	KIR2DS5	A0A0G2JLQ3	304 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286		A0A0G2JNG1	304 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	IRGM	A1A4Y4	181 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	RIIAD1	A6NNX1	92 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	KIR2DS3	K7RE56	304 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	RCBTB2	O95199	551 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	IKZF1	Q13422	519 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	KIR2DS5	Q14953	304 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	GPR139	Q6DWJ6	353 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	ARSK	Q6UWY0	536 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	OR6C4	Q8NGE1	309 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	MED18	Q9BUE0	208 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	RANBP3	Q9H6Z4	567 aa	Predicted RBP	13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	KRCC1	Q9NPI7	259 aa	Predicted RBP	13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	ZC4H2	Q9NQZ6	224 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	PRTFDC1	Q9NRG1	225 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	MRPL39	Q9NYK5	338 aa	Known RBP	13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	RASD1	Q9Y272	281 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	RPS10-NUDT3	A0A1W2PQS6	291 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	SELENOF	O60613	162 aa		13.54	□□□□□ -0.24
DDX55-209	ENST00000542286	EIF4E	P06730	217 aa	Known RBP	13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 39 ms