RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 GPR68Q15743 365 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 LSM12Q3MHD2 195 aaKnown RBP6.34□□□□□ -1.39
YBX3-209ENST00000540747 FAM174BQ3ZCQ3 159 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 GALNTL6Q49A17 601 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 HIKESHIQ53FT3 197 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 C6orf136Q5SQH8 315 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 C9orf135Q5VTT2 229 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 PAQR6Q6TCH4 344 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 FRRS1Q6ZNA5 592 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 LINGO2Q7L985 606 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 C6orf120Q7Z4R8 191 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 C10orf107Q8IVU9 208 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 FAM169BQ8N8A8 192 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 ZNF540Q8NDQ6 660 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 MAGEE2Q8TD90 523 aaPredicted RBP6.34□□□□□ -1.39
YBX3-209ENST00000540747 LRRC8CQ8TDW0 803 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 C3orf49Q96BT1 292 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 ZG16BQ96DA0 208 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 PPP3R2Q96LZ3 170 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 C3orf30Q96M34 536 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 SLC38A2Q96QD8 506 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 DOK1Q99704 481 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 PIF1Q9H611 641 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 SEC61A2Q9H9S3 476 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 POLE3Q9NRF9 147 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 ATAD3AQ9NVI7 634 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 FGFR1OP2Q9NVK5 253 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 PARPBPQ9NWS1 579 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 OSGIN1Q9UJX0 560 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 MKLN1Q9UL63 735 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 PCDHGB4Q9UN71 923 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 SLC35A3Q9Y2D2 325 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 NOTCH1P46531 2555 aa6.34□□□□□ -1.39
YBX3-209ENST00000540747 VWFP04275 2813 aa6.34□□□□□ -1.4
YBX3-209ENST00000540747 TMED7-TICAM2A0A0A6YYA0 188 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 A0A0A6YYJ9 748 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 TMEM72A0PK05 275 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 ZC3H12DA2A288 527 aaKnown RBP6.33□□□□□ -1.4
YBX3-209ENST00000540747 LIPT2A6NK58 231 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 DUXAA6NLW8 204 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 CLDN24A6NM45 220 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 SLCO1B7G3V0H7 640 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 AP3D1O14617 1153 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 KCNAB3O43448 404 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 TRIM13O60858 407 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 FZD7O75084 574 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 CYP7B1O75881 506 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 ATP5HO75947 161 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 WNT11O96014 354 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 CHEK2O96017 543 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 IGKV3-15P01624 115 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 OR4A8P0C604 315 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 CECR9P0C854 216 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 TFPIP10646 304 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 PRPS1L1P21108 318 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 MATN1P21941 496 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 RPS4Y1P22090 263 aaKnown RBP6.33□□□□□ -1.4
YBX3-209ENST00000540747 MAPK1P28482 360 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 CHN2P52757 468 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 DVL1P1P54792 670 aaPredicted RBP6.33□□□□□ -1.4
YBX3-209ENST00000540747 OR2B6P58173 313 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 SLC35A1P78382 337 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 NAAAQ02083 359 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 POU3F1Q03052 451 aaPredicted RBP6.33□□□□□ -1.4
YBX3-209ENST00000540747 MPP2Q14168 576 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 TBRG1Q3YBR2 411 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 SPDYE7PQ495Y7 208 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 ATP6AP1LQ52LC2 224 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 SWT1Q5T5J6 900 aaKnown RBP6.33□□□□□ -1.4
YBX3-209ENST00000540747 ANKRD16Q6P6B7 361 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 BHLHB9Q6PI77 547 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 SLC46A3Q7Z3Q1 461 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 MYPOPQ86VE0 399 aaPredicted RBP6.33□□□□□ -1.4
YBX3-209ENST00000540747 HOMEZQ8IX15 550 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 CLECL1Q8IZS7 167 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 CLEC4FQ8N1N0 589 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 ZNF786Q8N393 782 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 LINC01356Q8N9X3 169 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 POMGNT2Q8NAT1 580 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 NUP37Q8NFH4 326 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 OR9K2Q8NGE7 335 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 OR1K1Q8NGR3 316 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 CNOT9Q92600 299 aaKnown RBP6.33□□□□□ -1.4
YBX3-209ENST00000540747 BCL2L2Q92843 193 aaPredicted RBP6.33□□□□□ -1.4
YBX3-209ENST00000540747 DNAJA3Q96EY1 480 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 ZNF385AQ96PM9 386 aaKnown RBP6.33□□□□□ -1.4
YBX3-209ENST00000540747 C1orf50Q9BV19 199 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 DUSP26Q9BV47 211 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 SF3B5Q9BWJ5 86 aaKnown RBP6.33□□□□□ -1.4
YBX3-209ENST00000540747 RACGAP1Q9H0H5 632 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 OR51I1Q9H343 314 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 ZNF442Q9H7R0 627 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 SSU72Q9NP77 194 aaKnown RBP6.33□□□□□ -1.4
YBX3-209ENST00000540747 MKS1Q9NXB0 559 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 ASIC5Q9NY37 505 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 TMEFF2Q9UIK5 374 aaPredicted RBP6.33□□□□□ -1.4
YBX3-209ENST00000540747 TMED7Q9Y3B3 224 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 FIS1Q9Y3D6 152 aa6.33□□□□□ -1.4
YBX3-209ENST00000540747 RNF103-CHMP3A0A140T963 221 aa6.32□□□□□ -1.4
YBX3-209ENST00000540747 TMEM89A2RUT3 159 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms