RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 CFAP73A6NFT4 308 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 KLF11O14901 512 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 ITM2AO43736 263 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 AKR7A3O95154 331 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 IGLV1-44P01699 117 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 CRYAAP02489 173 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 C1QCP02747 245 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 CHRM4P08173 479 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 CREB1P16220 341 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 PPOXP50336 477 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 P2RY4P51582 365 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 CLNS1AP54105 237 aaKnown RBP11.81□□□□□ -0.52
SS18-204ENST00000539244 CEACAM7Q14002 265 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 GNA13Q14344 377 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 SQLEQ14534 574 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 ADIPOQQ15848 244 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 PDCD2Q16342 344 aaPredicted RBP11.81□□□□□ -0.52
SS18-204ENST00000539244 SYPL1Q16563 259 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 TBRG1Q3YBR2 411 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 MRPL2Q5T653 305 aaKnown RBP11.81□□□□□ -0.52
SS18-204ENST00000539244 IL17RELQ6ZVW7 336 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 LSRQ86X29 649 aaPredicted RBP11.81□□□□□ -0.52
SS18-204ENST00000539244 RNF130Q86XS8 419 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 ZNF440Q8IYI8 595 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 FAM169BQ8N8A8 192 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 ZNF781Q8N8C0 355 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 WDR60Q8WVS4 1066 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 ROPN1BQ9BZX4 212 aaPredicted RBP11.81□□□□□ -0.52
SS18-204ENST00000539244 BPESC1Q9GZL8 116 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 ROPN1Q9HAT0 212 aaPredicted RBP11.81□□□□□ -0.52
SS18-204ENST00000539244 MOV10Q9HCE1 1003 aaKnown RBP11.81□□□□□ -0.52
SS18-204ENST00000539244 TMEM45AQ9NWC5 275 aa11.81□□□□□ -0.52
SS18-204ENST00000539244 OR6C65A6NJZ3 312 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 ZNF587BE7ETH6 402 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 E9PBE3 544 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 SNUPNO95149 360 aaKnown RBP11.8□□□□□ -0.52
SS18-204ENST00000539244 VAMP5O95183 116 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 PGRP06401 933 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 DBIP07108 87 aaKnown RBP11.8□□□□□ -0.52
SS18-204ENST00000539244 MYZAPP0CAP1 466 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 IL7RP16871 459 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 CDH2P19022 906 aaPredicted RBP11.8□□□□□ -0.52
SS18-204ENST00000539244 GIFP27352 417 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 ANXA11P50995 505 aaKnown RBP11.8□□□□□ -0.52
SS18-204ENST00000539244 SRSF2Q01130 221 aaKnown RBP11.8□□□□□ -0.52
SS18-204ENST00000539244 NAAAQ02083 359 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 OR7A5Q15622 319 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 ZSWIM7Q19AV6 140 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 FAM174BQ3ZCQ3 159 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 SLC46A3Q7Z3Q1 461 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 NUDCD3Q8IVD9 361 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 TRIML2Q8N7C3 387 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 ANKS4BQ8N8V4 417 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 NUP37Q8NFH4 326 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 BCL2L2Q92843 193 aaPredicted RBP11.8□□□□□ -0.52
SS18-204ENST00000539244 AURKBQ96GD4 344 aaPredicted RBP11.8□□□□□ -0.52
SS18-204ENST00000539244 PPP1R36Q96LQ0 422 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 VRK1Q99986 396 aaPredicted RBP11.8□□□□□ -0.52
SS18-204ENST00000539244 KCNS3Q9BQ31 491 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 HAO1Q9UJM8 370 aa11.8□□□□□ -0.52
SS18-204ENST00000539244 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.8□□□□□ -0.52
SS18-204ENST00000539244 CDHR4A6H8M9 788 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 CCDC154A6NI56 674 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 HAX1O00165 279 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 NPIPB7O75200 414 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 LGI1O95970 557 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 TGFAP01135 160 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 IGKV3-15P01624 115 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 SERPINE1P05121 402 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 TACSTD2P09758 323 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 OR4A8P0C604 315 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 HOXB1P14653 301 aaPredicted RBP11.79□□□□□ -0.52
SS18-204ENST00000539244 LBPP18428 481 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 CXCR1P25024 350 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 S100A3P33764 101 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 ACAA2P42765 397 aaKnown RBP11.79□□□□□ -0.52
SS18-204ENST00000539244 IDH3GP51553 393 aaPredicted RBP11.79□□□□□ -0.52
SS18-204ENST00000539244 ABCE1P61221 599 aaKnown RBP11.79□□□□□ -0.52
SS18-204ENST00000539244 MAPK11Q15759 364 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 CR1LQ2VPA4 569 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 IQCCQ4KMZ1 466 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 LIPNQ5VXI9 398 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 TMEM225Q6GV28 225 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 OGFOD2Q6N063 350 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 ANKRD16Q6P6B7 361 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 CREB3L2Q70SY1 520 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 LINGO2Q7L985 606 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 GPAT4Q86UL3 456 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 KIRREL3Q8IZU9 778 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 RFLNBQ8N5W9 214 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 ANKK1Q8NFD2 765 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 OR4F15Q8NGB8 312 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 HPS1Q92902 700 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 C3orf49Q96BT1 292 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 ALKBH3Q96Q83 286 aaPredicted RBP11.79□□□□□ -0.52
SS18-204ENST00000539244 SOX7Q9BT81 388 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 LINC00470Q9BZP3 86 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 C20orf27Q9GZN8 174 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 RAB1BQ9H0U4 201 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 NELFAQ9H3P2 528 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms