RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 ITGA5P08648 1049 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 HNRNPCL4P0DMR1 293 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 ETFAP13804 333 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 MPGP29372 298 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 TTKP33981 857 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 POLR2JP52435 117 aaKnown RBP11.53□□□□□ -0.56
RTN3-207ENST00000536011 NUDT6P53370 316 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 PRPS1P60891 318 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 STX1BP61266 288 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 MAGOHP61326 146 aaKnown RBP11.53□□□□□ -0.56
RTN3-207ENST00000536011 CEACAM7Q14002 265 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 OR7A5Q15622 319 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 PRAMEF8Q5VWM4 474 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 PRAMEF7Q5VXH5 474 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 CLEC2AQ6UVW9 174 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 ZNF836Q6ZNA1 936 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 AAED1Q7RTV5 226 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 GPAT4Q86UL3 456 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 MUC15Q8N387 334 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 OR9K2Q8NGE7 335 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 OR52E4Q8NGH9 312 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 SLC38A5Q8WUX1 472 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 SLC35B4Q969S0 331 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 RHNO1Q9BSD3 238 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 MOV10Q9HCE1 1003 aaKnown RBP11.53□□□□□ -0.56
RTN3-207ENST00000536011 OBP2BQ9NPH6 170 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 SLC17A5Q9NRA2 495 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 SLC7A10Q9NS82 523 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 RLIMQ9NVW2 624 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 PLCE1Q9P212 2302 aa11.53□□□□□ -0.56
RTN3-207ENST00000536011 ZC3H12DA2A288 527 aaKnown RBP11.52□□□□□ -0.57
RTN3-207ENST00000536011 KLF11O14901 512 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 C1QCP02747 245 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 TFPTP0C1Z6 253 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 GKN3PP0CG01 181 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 GTF2E2P29084 291 aaKnown RBP11.52□□□□□ -0.57
RTN3-207ENST00000536011 FABP6P51161 128 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 MVDP53602 400 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 CHRNB3Q05901 458 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 FADDQ13158 208 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 RAB35Q15286 201 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 SLC9B1Q4ZJI4 515 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 TSPO2Q5TGU0 170 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 DMRTA1Q5VZB9 504 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 TMEM225Q6GV28 225 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 VRK2Q86Y07 508 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 TMEM19Q96HH6 336 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 ZNF317Q96PQ6 595 aaPredicted RBP11.52□□□□□ -0.57
RTN3-207ENST00000536011 SPATA9Q9BWV2 254 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 CACNG6Q9BXT2 260 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 B3GALT5Q9Y2C3 310 aa11.52□□□□□ -0.57
RTN3-207ENST00000536011 A0A1W2PR80 420 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 C5orf58C9J3I9 102 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 E7EQL1 145 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 ZNF587BE7ETH6 402 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 H7C417 338 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 SSX4O60224 188 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 CRLF1O75462 422 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 AKR7A3O95154 331 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 AHSA1O95433 338 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 CSF3P09919 207 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 NTF4P34130 210 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 ACAA2P42765 397 aaKnown RBP11.51□□□□□ -0.57
RTN3-207ENST00000536011 ZNF311Q5JNZ3 666 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 C9orf135Q5VTT2 229 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 C1orf140Q5VVS0 124 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 C11orf71Q6IPW1 123 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 DNM1P46Q6ZS02 220 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 PRIMA1Q86XR5 153 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 GOLGA6L1Q8N7Z2 621 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 TMEM99Q8N816 258 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 BBS10Q8TAM1 723 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 STK35Q8TDR2 534 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 ZBTB9Q96C00 473 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 KCNS3Q9BQ31 491 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 A4GALTQ9NPC4 353 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 SLC6A13Q9NSD5 602 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 TMEM45AQ9NWC5 275 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 ADPRHL2Q9NX46 363 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 GDF2Q9UK05 429 aaPredicted RBP11.51□□□□□ -0.57
RTN3-207ENST00000536011 RASD1Q9Y272 281 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 ATP23Q9Y6H3 246 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 PMF1-BGLAPU3KQ54 211 aa11.51□□□□□ -0.57
RTN3-207ENST00000536011 POLR3GO15318 223 aaPredicted RBP11.5□□□□□ -0.57
RTN3-207ENST00000536011 FRS3O43559 492 aa11.5□□□□□ -0.57
RTN3-207ENST00000536011 CD5LO43866 347 aa11.5□□□□□ -0.57
RTN3-207ENST00000536011 TGDSO95455 350 aa11.5□□□□□ -0.57
RTN3-207ENST00000536011 PPIBP23284 216 aaKnown RBP11.5□□□□□ -0.57
RTN3-207ENST00000536011 SH3BGRP55822 239 aaPredicted RBP11.5□□□□□ -0.57
RTN3-207ENST00000536011 UBE2NP61088 152 aaKnown RBP11.5□□□□□ -0.57
RTN3-207ENST00000536011 KRTAP1-1Q07627 177 aa11.5□□□□□ -0.57
RTN3-207ENST00000536011 SPOCK1Q08629 439 aa11.5□□□□□ -0.57
RTN3-207ENST00000536011 MAPK11Q15759 364 aa11.5□□□□□ -0.57
RTN3-207ENST00000536011 RPS26P11Q5JNZ5 115 aaPredicted RBP11.5□□□□□ -0.57
RTN3-207ENST00000536011 C5orf46Q6UWT4 87 aa11.5□□□□□ -0.57
RTN3-207ENST00000536011 KRT73Q86Y46 540 aa11.5□□□□□ -0.57
RTN3-207ENST00000536011 WDR31Q8NA23 367 aa11.5□□□□□ -0.57
RTN3-207ENST00000536011 MAPK1IP1LQ8NDC0 245 aa11.5□□□□□ -0.57
RTN3-207ENST00000536011 VPS33AQ96AX1 596 aa11.5□□□□□ -0.57
RTN3-207ENST00000536011 TLCD1Q96CP7 247 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms