RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 ALDOBP05062 364 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 ZDHHC11BP0C7U3 371 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 HNRNPCL4P0DMR1 293 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 MYOGP15173 224 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 EPORP19235 508 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 TNFRSF1BP20333 461 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 DDX6P26196 483 aaKnown RBP eCLIP6.06□□□□□ -1.44
USP28-202ENST00000535607 SERPINA4P29622 427 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 SSTR2P30874 369 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 HTR1FP30939 366 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 CCR7P32248 378 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 STARP49675 285 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 RAB13P51153 203 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 CCR9P51686 369 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 CRYBA2P53672 197 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 LOXL3P58215 753 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 VSX2P58304 361 aaPredicted RBP6.06□□□□□ -1.44
USP28-202ENST00000535607 SEC61A1P61619 476 aaKnown RBP6.06□□□□□ -1.44
USP28-202ENST00000535607 ACTC1P68032 377 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 ACTA1P68133 377 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 HBA1P69905 142 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 SEMG2Q02383 582 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 STX4Q12846 297 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 TSPAN31Q12999 210 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 GAB1Q13480 694 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 PDE7AQ13946 482 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 TRAM2Q15035 370 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 MPPED2Q15777 294 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 TAF12Q16514 161 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 SYTL3Q4VX76 610 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 ZNF311Q5JNZ3 666 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 PABPC1L2AQ5JQF8 200 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 UBE2NLQ5JXB2 153 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 PDSS1Q5T2R2 415 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 PRAMEF8Q5VWM4 474 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 PRAMEF7Q5VXH5 474 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 SFXN4Q6P4A7 337 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 ZNF322Q6U7Q0 402 aaPredicted RBP6.06□□□□□ -1.44
USP28-202ENST00000535607 GSG1LQ6UXU4 331 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 CEACAM20Q6UY09 585 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 SHFQ7M4L6 423 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 MRGPREQ86SM8 312 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 LHFPL3Q86UP9 236 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 SIAH3Q8IW03 269 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 CDH26Q8IXH8 852 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 OR4N4Q8N0Y3 316 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 SVBPQ8N300 66 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 ARIH2OSQ8N7S6 290 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 ZNF527Q8NB42 609 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 FAM98AQ8NCA5 519 aaKnown RBP6.06□□□□□ -1.44
USP28-202ENST00000535607 PXT1Q8NFP0 134 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 OR1M1Q8NGA1 313 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 OR11H4Q8NGC9 324 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 COQ8AQ8NI60 647 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 TRMT10AQ8TBZ6 339 aaKnown RBP6.06□□□□□ -1.44
USP28-202ENST00000535607 FCAMRQ8WWV6 532 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 YIPF5Q969M3 257 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 NEURL3Q96EH8 262 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 PHYHIPLQ96FC7 376 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 ELMOD3Q96FG2 381 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 ZC3H10Q96K80 434 aaKnown RBP6.06□□□□□ -1.44
USP28-202ENST00000535607 PRRC1Q96M27 445 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 C12orf66Q96MD2 445 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 SLC46A1Q96NT5 459 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 C12orf57Q99622 126 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 DPH1Q9BZG8 443 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 NKX6-2Q9C056 277 aaPredicted RBP6.06□□□□□ -1.44
USP28-202ENST00000535607 C20orf85Q9H1P6 137 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 PIGMQ9H3S5 423 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 SFXN1Q9H9B4 322 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 PLEKHA1Q9HB21 404 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 NANSQ9NR45 359 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 C14orf105Q9NVL8 296 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 KLHL28Q9NXS3 571 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 TAS2R8Q9NYW2 309 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 NLGN3Q9NZ94 848 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 KLHL9Q9P2J3 617 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 RHCGQ9UBD6 479 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 EPHA6Q9UF33 1036 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 PURGQ9UJV8 347 aaKnown RBP6.06□□□□□ -1.44
USP28-202ENST00000535607 ING1Q9UK53 422 aaPredicted RBP6.06□□□□□ -1.44
USP28-202ENST00000535607 ACAD8Q9UKU7 415 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 ICKQ9UPZ9 632 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 TMEM5Q9Y2B1 443 aa6.06□□□□□ -1.44
USP28-202ENST00000535607 ZFP37Q9Y6Q3 630 aaPredicted RBP6.06□□□□□ -1.44
USP28-202ENST00000535607 TRGV11A0A075B6L2 103 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 A0A087WWL8 130 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 CXorf51AA0A1B0GTR3 108 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 DAPL1A0PJW8 107 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 TRABD2BA6NFA1 517 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 CD8B2A6NJW9 211 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 SLC38A8A6NNN8 435 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 HIDE1A8MVS5 230 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 A8MX80 341 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 ZNF879B4DU55 563 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 E9PLN8 166 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 ZNF593O00488 134 aaPredicted RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 GATCO43716 136 aaKnown RBP6.05□□□□□ -1.44
USP28-202ENST00000535607 TBX19O60806 448 aa6.05□□□□□ -1.44
USP28-202ENST00000535607 GATBO75879 557 aaKnown RBP6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms