RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 AP3D1O14617 1153 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 HNRNPCL1O60812 293 aaKnown RBP11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 ERLIN1O75477 346 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 AKR7A3O95154 331 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 BCHEP06276 602 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 HNRNPCL4P0DMR1 293 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 PTNP21246 168 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 GZMKP49863 264 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 PDLIM4P50479 330 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 SH3BGRP55822 239 aaPredicted RBP11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 C1DQ13901 141 aaKnown RBP11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 ELOA3BQ3SY89 546 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 IQCCQ4KMZ1 466 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 TSPO2Q5TGU0 170 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 MSANTD1Q6ZTZ1 278 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 SNX32Q86XE0 403 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 KRT73Q86Y46 540 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 HIPK1Q86Z02 1210 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 ELOA3Q8NG57 546 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 OR9K2Q8NGE7 335 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 RNF217Q8TC41 542 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 MGARPQ8TDB4 240 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 FBXO17Q96EF6 278 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 AURKBQ96GD4 344 aaPredicted RBP11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 VRK1Q99986 396 aaPredicted RBP11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 SPATA5L1Q9BVQ7 753 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 SLC38A1Q9H2H9 487 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 SLC7A10Q9NS82 523 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 HAO1Q9UJM8 370 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 KCNS2Q9ULS6 477 aa11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 V9GYY5 206 aaPredicted RBP11.63□□□□□ -0.55
CLSTN3-205ENST00000535452 USF3Q68DE3 2245 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 CDHR4A6H8M9 788 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 AQP7P3A6NL99 342 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 NDUFS8O00217 210 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 OR2T1O43869 369 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 THBS1P07996 1170 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 CHRM4P08173 479 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 ZNF43P17038 809 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 USF1P22415 310 aaPredicted RBP11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 EPHA3P29320 983 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 IRX1P78414 480 aaPredicted RBP11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 H3F3AP84243 136 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 LOXL1Q08397 574 aaPredicted RBP11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 FUT5Q11128 374 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 SLC17A1Q14916 467 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 TMEM249Q2WGJ8 235 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 ZNF311Q5JNZ3 666 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 RNF220Q5VTB9 566 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 NIPAL3Q6P499 406 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 C5orf46Q6UWT4 87 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 MIER2Q8N344 545 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 GPR137CQ8N3F9 429 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 SLC25A36Q96CQ1 311 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 ZG16BQ96DA0 208 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 SORT1Q99523 831 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 PARD6BQ9BYG5 372 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 RAB1BQ9H0U4 201 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 TPT1P8Q9HAU6 139 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 ZIM2Q9NZV7 527 aa11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 ZNF443Q9Y2A4 671 aaPredicted RBP11.62□□□□□ -0.55
CLSTN3-205ENST00000535452 NSD1Q96L73 2696 aaPredicted RBP11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 IGHV4-30-2A0A087WSY4 118 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 TMEM120BA0PK00 339 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 LIPT2A6NK58 231 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 UBDO15205 165 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 NDUFS7O75251 213 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 SLC43A1O75387 559 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 CD8AP01732 235 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 ITGA5P08648 1049 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 TFPTP0C1Z6 253 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 GKN3PP0CG01 181 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 FAM157CP0CG43 387 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 IMPDH2P12268 514 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 LSP1P33241 339 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 CAPZA2P47755 286 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 LSM11P83369 360 aaKnown RBP eCLIP11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 FADDQ13158 208 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 C6orf52Q5T4I8 152 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 C1orf140Q5VVS0 124 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 AP1ARQ63HQ0 302 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 ZNF836Q6ZNA1 936 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 ZNF525Q8N782 197 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 GOLGA6L1Q8N7Z2 621 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 TMEM99Q8N816 258 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 BBS10Q8TAM1 723 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 STK35Q8TDR2 534 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 SPATA9Q9BWV2 254 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 WDR55Q9H6Y2 383 aaPredicted RBP11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 MANSC1Q9H8J5 431 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 B3GAT2Q9NPZ5 323 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 MOKQ9UQ07 419 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 GPR45Q9Y5Y3 372 aa11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 ZNF469Q96JG9 3925 aaPredicted RBP11.61□□□□□ -0.55
CLSTN3-205ENST00000535452 ROS1P08922 2347 aa11.6□□□□□ -0.55
CLSTN3-205ENST00000535452 B9A039 149 aa11.6□□□□□ -0.55
CLSTN3-205ENST00000535452 ATP6V1G2-DDX39BF2Z307 99 aa11.6□□□□□ -0.55
CLSTN3-205ENST00000535452 SDHDO14521 159 aa11.6□□□□□ -0.55
CLSTN3-205ENST00000535452 KLF11O14901 512 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms