RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 NLGN3Q9NZ94 848 aa2.79□□□□□ -1.96
CD44-229ENST00000528672 GCNT4Q9P109 453 aa2.79□□□□□ -1.96
CD44-229ENST00000528672 EIF3KQ9UBQ5 218 aaKnown RBP2.79□□□□□ -1.96
CD44-229ENST00000528672 KCNG2Q9UJ96 466 aa2.79□□□□□ -1.96
CD44-229ENST00000528672 CRLS1Q9UJA2 301 aa2.79□□□□□ -1.96
CD44-229ENST00000528672 PURGQ9UJV8 347 aaKnown RBP2.79□□□□□ -1.96
CD44-229ENST00000528672 TBC1D24Q9ULP9 559 aa2.79□□□□□ -1.96
CD44-229ENST00000528672 PPP1R3CQ9UQK1 317 aa2.79□□□□□ -1.96
CD44-229ENST00000528672 TCF19Q9Y242 345 aa2.79□□□□□ -1.96
CD44-229ENST00000528672 STARD10Q9Y365 291 aa2.79□□□□□ -1.96
CD44-229ENST00000528672 DHRS7Q9Y394 339 aa2.79□□□□□ -1.96
CD44-229ENST00000528672 MRPS18CQ9Y3D5 142 aaKnown RBP2.79□□□□□ -1.96
CD44-229ENST00000528672 SLCO1B1Q9Y6L6 691 aa2.79□□□□□ -1.96
CD44-229ENST00000528672 CSNK1G3Q9Y6M4 447 aa2.79□□□□□ -1.96
CD44-229ENST00000528672 V9GYQ6 96 aa2.79□□□□□ -1.96
CD44-229ENST00000528672 NACADO15069 1562 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 ATP10DQ9P241 1426 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 LRPPRCP42704 1394 aaKnown RBP2.78□□□□□ -1.96
CD44-229ENST00000528672 RFX7Q2KHR2 1363 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 KIF24Q5T7B8 1368 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 A0A0A6YYD4 124 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 NPIPA5A0A0B4J1W7 369 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 PVALEFA0A1B0GWK0 134 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 GNG14A0A1W2PPG7 69 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 LRIT2A6NDA9 550 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 FBLL1A6NHQ2 334 aaKnown RBP2.78□□□□□ -1.96
CD44-229ENST00000528672 ZNF729A6NN14 1252 aaPredicted RBP2.78□□□□□ -1.96
CD44-229ENST00000528672 PMS2P5A8MQ11 134 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 A8MXQ7 604 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 NPIPA5E9PKD4 350 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 BLOC1S5-TXNDC5H3BN57 136 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 KLRC4-KLRK1H3BQV0 150 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 H7C0C1 242 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 K7ERI5 159 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 ABCD4O14678 606 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 CASKO14936 926 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 TM9SF1O15321 606 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 RNF13O43567 381 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 CHMP2AO43633 222 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 DUX1O43812 170 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 ZNF432O94892 652 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 DEXIO95424 95 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 SNAP29O95721 258 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 IGSF6O95976 241 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 IGLV2-11P01706 119 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 SERPINA5P05154 406 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 CALB1P05937 261 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 MX1P20591 662 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 EDNRAP25101 427 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 IL12BP29460 328 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 FCGR2CP31995 323 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 FDFT1P37268 417 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 HCAR3P49019 387 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 TGM4P49221 684 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 ARRB1P49407 418 aaPredicted RBP2.78□□□□□ -1.96
CD44-229ENST00000528672 PGFP49763 221 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 NKX2-5P52952 324 aaPredicted RBP2.78□□□□□ -1.96
CD44-229ENST00000528672 CRYBA2P53672 197 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 ERVK-16P61578 105 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 RAB11AP62491 216 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 RPL10AP62906 217 aaKnown RBP2.78□□□□□ -1.96
CD44-229ENST00000528672 RPS27AP62979 156 aaKnown RBP2.78□□□□□ -1.96
CD44-229ENST00000528672 TNNC1P63316 161 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 TFDP1Q14186 410 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 MTF1Q14872 753 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 EMC2Q15006 297 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 RAB11BQ15907 218 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 C5orf64Q2M2E5 130 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 EXOC3L2Q2M3D2 409 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 GOLGA7BQ2TAP0 167 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 COQ5Q5HYK3 327 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 SEL1L2Q5TEA6 688 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 TMEM225Q6GV28 225 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 LEG1Q6P5S2 330 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 ZNF530Q6P9A1 599 aaPredicted RBP2.78□□□□□ -1.96
CD44-229ENST00000528672 TMEM220Q6QAJ8 160 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 C5orf46Q6UWT4 87 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 METTL7BQ6UX53 244 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 FAM151BQ6UXP7 276 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 LHFPL3Q86UP9 236 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 TRIM69Q86WT6 500 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 NUDCD3Q8IVD9 361 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 UBE2J2Q8N2K1 259 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 ALLCQ8N6M5 410 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 CYB561A3Q8NBI2 242 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 OR10H4Q8NGA5 316 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 OR1K1Q8NGR3 316 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 OR13C9Q8NGT0 318 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 OR4F5Q8NH21 305 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 ARNTL2Q8WYA1 636 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 ELMO1Q92556 727 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 SLCO2A1Q92959 643 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 EMG1Q92979 244 aaKnown RBP2.78□□□□□ -1.96
CD44-229ENST00000528672 LHX4Q969G2 390 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 MARC2Q969Z3 335 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 MYLPFQ96A32 169 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 ADIPOR1Q96A54 375 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 UPRTQ96BW1 309 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 SEC22CQ9BRL7 303 aa2.78□□□□□ -1.96
CD44-229ENST00000528672 RAB1BQ9H0U4 201 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms