RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 SMYD1Q8NB12 490 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 STEAP2Q8NFT2 490 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 OR9K2Q8NGE7 335 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 PIGXQ8TBF5 258 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 TAAR8Q969N4 342 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 DDIT4LQ96D03 193 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 ARHGDIGQ99819 225 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 TACO1Q9BSH4 297 aaKnown RBP9.38□□□□□ -0.91
CD44-227ENST00000528086 AMBRA1Q9C0C7 1298 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 RAD21L1Q9H4I0 556 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 NANOGQ9H9S0 305 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 UBTD1Q9HAC8 227 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 ZNF232Q9UNY5 417 aa9.38□□□□□ -0.91
CD44-227ENST00000528086 NOSIPQ9Y314 301 aaKnown RBP9.38□□□□□ -0.91
CD44-227ENST00000528086 SPIN1Q9Y657 262 aaPredicted RBP9.38□□□□□ -0.91
CD44-227ENST00000528086 A0A0B4J2E0 115 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 A0A1B0GX12 115 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 A0A1W2PR80 420 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 LRRN3E7EW58 273 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 M0QX08 132 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 M0R3H8 397 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 ZNF432O94892 652 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 LGI1O95970 557 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 HPRP00739 348 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 PPIBP23284 216 aaKnown RBP9.37□□□□□ -0.91
CD44-227ENST00000528086 CXCR1P25024 350 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 IDUAP35475 653 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 MAP2K6P52564 334 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 NFYCQ13952 458 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 KEAP1Q14145 624 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 GABRA6Q16445 453 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 NRF1Q16656 503 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 ZSWIM7Q19AV6 140 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 FBXW10Q5XX13 1052 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 LINC00114Q6XXX2 140 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 HIPK4Q8NE63 616 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 OR6T1Q8NGN1 323 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 OR10A6Q8NH74 314 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 STK35Q8TDR2 534 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 KISS1RQ969F8 398 aaPredicted RBP9.37□□□□□ -0.91
CD44-227ENST00000528086 TMEM45BQ96B21 275 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 MUS81Q96NY9 551 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 SIKE1Q9BRV8 207 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 HDHD5Q9BXW7 423 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 NELFAQ9H3P2 528 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 RABEP2Q9H5N1 569 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 ADPRHL2Q9NX46 363 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 PRDM4Q9UKN5 801 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 SLC25A15Q9Y619 301 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 NIPBLQ6KC79 2804 aaeCLIP9.37□□□□□ -0.91
CD44-227ENST00000528086 ARFGEF3Q5TH69 2177 aa9.37□□□□□ -0.91
CD44-227ENST00000528086 CSPG4Q6UVK1 2322 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 OR5H1A6NKK0 313 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 SHISA9B4DS77 424 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 C5orf58C9J3I9 102 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 EIF1BO60739 113 aaKnown RBP9.36□□□□□ -0.91
CD44-227ENST00000528086 RAD51DO75771 328 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 CNOT4O95628 575 aaKnown RBP9.36□□□□□ -0.91
CD44-227ENST00000528086 GPIP06744 558 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 SOD3P08294 240 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 DANCRP0C864 163 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 PNMTP11086 282 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 SLC6A2P23975 617 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 PCGF2P35227 344 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 MDH1P40925 334 aaKnown RBP9.36□□□□□ -0.91
CD44-227ENST00000528086 RPS5P46782 204 aaKnown RBP9.36□□□□□ -0.91
CD44-227ENST00000528086 SELENOPP49908 381 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 ARFIP2P53365 341 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 CDH12P55289 794 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 BSPH1Q075Z2 132 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 SPOCK1Q08629 439 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 FAPQ12884 760 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 OR1Q1Q15612 314 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 PGGHGQ32M88 737 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 TRMT5Q32P41 509 aaKnown RBP9.36□□□□□ -0.91
CD44-227ENST00000528086 C9orf135Q5VTT2 229 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 REP15Q6BDI9 236 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 ALKBH2Q6NS38 261 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 ADAM5Q6NVV9 412 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 CREB3L2Q70SY1 520 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 SNX32Q86XE0 403 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 TREML1Q86YW5 311 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 ZNF100Q8IYN0 542 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 CIARTQ8N365 385 aaPredicted RBP9.36□□□□□ -0.91
CD44-227ENST00000528086 C11orf65Q8NCR3 313 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 KBTBD8Q8NFY9 601 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 MFSD8Q8NHS3 518 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 HSD17B8Q92506 261 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 AKAP1Q92667 903 aaKnown RBP eCLIP9.36□□□□□ -0.91
CD44-227ENST00000528086 SLC38A4Q969I6 547 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 APH1AQ96BI3 265 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 LRRC58Q96CX6 371 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 ZNF837Q96EG3 531 aaPredicted RBP9.36□□□□□ -0.91
CD44-227ENST00000528086 ZNF583Q96ND8 569 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 MOGAT1Q96PD6 335 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 PIP5K1AQ99755 562 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 TRIM2Q9C040 744 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 GSX1Q9H4S2 264 aaPredicted RBP9.36□□□□□ -0.91
CD44-227ENST00000528086 PIF1Q9H611 641 aa9.36□□□□□ -0.91
CD44-227ENST00000528086 C12orf10Q9HB07 376 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms