RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 CA10Q9NS85 328 aa20.52■□□□□ 0.88
CPSF1-202ENST00000527827 CFAP73A6NFT4 308 aa20.51■□□□□ 0.87
CPSF1-202ENST00000527827 P2RY4P51582 365 aa20.51■□□□□ 0.87
CPSF1-202ENST00000527827 LGALS3BPQ08380 585 aa20.51■□□□□ 0.87
CPSF1-202ENST00000527827 CARTPTQ16568 116 aa20.51■□□□□ 0.87
CPSF1-202ENST00000527827 DPY19L1Q2PZI1 675 aa20.51■□□□□ 0.87
CPSF1-202ENST00000527827 FAM174BQ3ZCQ3 159 aa20.51■□□□□ 0.87
CPSF1-202ENST00000527827 VRK1Q99986 396 aaPredicted RBP20.51■□□□□ 0.87
CPSF1-202ENST00000527827 SOX7Q9BT81 388 aa20.51■□□□□ 0.87
CPSF1-202ENST00000527827 KATNB1Q9BVA0 655 aa20.51■□□□□ 0.87
CPSF1-202ENST00000527827 MTHFD2LQ9H903 347 aaPredicted RBP20.51■□□□□ 0.87
CPSF1-202ENST00000527827 MYOZ1Q9NP98 299 aaPredicted RBP20.51■□□□□ 0.87
CPSF1-202ENST00000527827 TMEM45AQ9NWC5 275 aa20.51■□□□□ 0.87
CPSF1-202ENST00000527827 BTNL2Q9UIR0 455 aa20.51■□□□□ 0.87
CPSF1-202ENST00000527827 LGI1O95970 557 aa20.5■□□□□ 0.87
CPSF1-202ENST00000527827 IL7RP16871 459 aa20.5■□□□□ 0.87
CPSF1-202ENST00000527827 ZNF23P17027 643 aa20.5■□□□□ 0.87
CPSF1-202ENST00000527827 S100A3P33764 101 aa20.5■□□□□ 0.87
CPSF1-202ENST00000527827 CLNS1AP54105 237 aaKnown RBP20.5■□□□□ 0.87
CPSF1-202ENST00000527827 ABCE1P61221 599 aaKnown RBP20.5■□□□□ 0.87
CPSF1-202ENST00000527827 ADIPOQQ15848 244 aa20.5■□□□□ 0.87
CPSF1-202ENST00000527827 SLC46A3Q7Z3Q1 461 aa20.5■□□□□ 0.87
CPSF1-202ENST00000527827 SPATA19Q7Z5L4 167 aa20.5■□□□□ 0.87
CPSF1-202ENST00000527827 ABHD12BQ7Z5M8 362 aaPredicted RBP20.5■□□□□ 0.87
CPSF1-202ENST00000527827 GPAT4Q86UL3 456 aa20.5■□□□□ 0.87
CPSF1-202ENST00000527827 TEX37Q96LM6 180 aa20.5■□□□□ 0.87
CPSF1-202ENST00000527827 BPESC1Q9GZL8 116 aa20.5■□□□□ 0.87
CPSF1-202ENST00000527827 WDR91A4D1P6 747 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 B9A039 149 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 E9PBE3 544 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 PDE5AO76074 875 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 TGFAP01135 160 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 SERPINE1P05121 402 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 MYZAPP0CAP1 466 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 UQCRBP14927 111 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 HNF1AP20823 631 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 IFFO1Q0D2I5 559 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 MAPK11Q15759 364 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 CHI3L2Q15782 390 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 GSTA3Q16772 222 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 IQCCQ4KMZ1 466 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 ANKRD16Q6P6B7 361 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 LINGO2Q7L985 606 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 BCL2L2Q92843 193 aaPredicted RBP20.49■□□□□ 0.87
CPSF1-202ENST00000527827 SORT1Q99523 831 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 KCNS3Q9BQ31 491 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 ROPN1BQ9BZX4 212 aaPredicted RBP20.49■□□□□ 0.87
CPSF1-202ENST00000527827 PLK3Q9H4B4 646 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 ROPN1Q9HAT0 212 aaPredicted RBP20.49■□□□□ 0.87
CPSF1-202ENST00000527827 RLIMQ9NVW2 624 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 CRNNQ9UBG3 495 aaPredicted RBP20.49■□□□□ 0.87
CPSF1-202ENST00000527827 RAP2CQ9Y3L5 183 aa20.49■□□□□ 0.87
CPSF1-202ENST00000527827 CCDC154A6NI56 674 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 HAX1O00165 279 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 NR5A2O00482 541 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 KRT33AO76009 404 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 CRYAAP02489 173 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 DBIP07108 87 aaKnown RBP20.48■□□□□ 0.87
CPSF1-202ENST00000527827 OR4A8P0C604 315 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 GKN3PP0CG01 181 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 CXCR1P25024 350 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 ACAA2P42765 397 aaKnown RBP20.48■□□□□ 0.87
CPSF1-202ENST00000527827 CDKN2CP42773 168 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 SELENOPP49908 381 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 NAAAQ02083 359 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 BNIP2Q12982 314 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 GNA13Q14344 377 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 EFNB3Q15768 340 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 COX20Q5RI15 118 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 TMEM225Q6GV28 225 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 CREB3L2Q70SY1 520 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 ALKBH3Q96Q83 286 aaPredicted RBP20.48■□□□□ 0.87
CPSF1-202ENST00000527827 NELFAQ9H3P2 528 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 SEC61A2Q9H9S3 476 aa20.48■□□□□ 0.87
CPSF1-202ENST00000527827 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.48■□□□□ 0.87
CPSF1-202ENST00000527827 ARPC4-TTLL3A0A0A6YYG9 625 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 ZNF587BE7ETH6 402 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 CECR9P0C854 216 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 NR2F1P10589 423 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 LBPP18428 481 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 CALCRP30988 508 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 PPOXP50336 477 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 RPL14P50914 215 aaKnown RBP20.47■□□□□ 0.87
CPSF1-202ENST00000527827 UFM1P61960 85 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 TUBA1BP68363 451 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 TUBA4AP68366 448 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 TXNL4AP83876 142 aaKnown RBP20.47■□□□□ 0.87
CPSF1-202ENST00000527827 CR1LQ2VPA4 569 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 C3orf36Q3SXR2 165 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 VHLLQ6RSH7 139 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 TUBA1AQ71U36 451 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 ZNF440Q8IYI8 595 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 LRRC34Q8IZ02 419 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 PANX1Q96RD7 426 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 NUF2Q9BZD4 464 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 ADPRHL2Q9NX46 363 aa20.47■□□□□ 0.87
CPSF1-202ENST00000527827 LRP5LA4QPB2 252 aa20.46■□□□□ 0.87
CPSF1-202ENST00000527827 CDHR4A6H8M9 788 aa20.46■□□□□ 0.87
CPSF1-202ENST00000527827 FRS3O43559 492 aa20.46■□□□□ 0.87
CPSF1-202ENST00000527827 UPK3AO75631 287 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms