RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 IPCEF1Q8WWN9 437 aaPredicted RBP18.99■□□□□ 0.63
VPS28-208ENST00000527797 DTNBP1Q96EV8 351 aa18.99■□□□□ 0.63
VPS28-208ENST00000527797 DNAJA3Q96EY1 480 aa18.99■□□□□ 0.63
VPS28-208ENST00000527797 ZFP64Q9NPA5 681 aa18.99■□□□□ 0.63
VPS28-208ENST00000527797 RPH3AQ9Y2J0 694 aaPredicted RBP18.99■□□□□ 0.63
VPS28-208ENST00000527797 LRRC3CA6NJW4 275 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 MCIDASD6RGH6 385 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 ZIC3O60481 467 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 PEPDP12955 493 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 AQP2P41181 271 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 FOXK1P85037 733 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 SELENBP1Q13228 472 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 MFSD13AQ14CX5 517 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 GLYR1Q49A26 553 aaPredicted RBP18.98■□□□□ 0.63
VPS28-208ENST00000527797 GXYLT1Q4G148 440 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 ZNF773Q6PK81 442 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 MOSPD2Q8NHP6 518 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 MFSD8Q8NHS3 518 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 SLC25A43Q8WUT9 341 aaPredicted RBP18.98■□□□□ 0.63
VPS28-208ENST00000527797 HAS2Q92819 552 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 LRR1Q96L50 414 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 ASPNQ9BXN1 380 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 DUSP21Q9H596 190 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 CCNB1IP1Q9NPC3 277 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 DNAJC27Q9NZQ0 273 aa18.98■□□□□ 0.63
VPS28-208ENST00000527797 H3BML4 177 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 NOS3P29474 1203 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 UQCRC1P31930 480 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 NUDT6P53370 316 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 ARG2P78540 354 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 TOMM20Q15388 145 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 SYT14P1Q58G82 188 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 SLC35F1Q5T1Q4 408 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 RAET1LQ5VY80 246 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 SLC25A25Q6KCM7 469 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 IGFN1Q86VF2 1251 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 MDS2Q8NDY4 140 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 OR2M7Q8NG81 312 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 OR5J2Q8NH18 312 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 SNIP1Q8TAD8 396 aaKnown RBP18.97■□□□□ 0.63
VPS28-208ENST00000527797 RELTQ969Z4 430 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 ARL5BQ96KC2 179 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 ERMAPQ96PL5 475 aaPredicted RBP18.97■□□□□ 0.63
VPS28-208ENST00000527797 GPX7Q96SL4 187 aaPredicted RBP18.97■□□□□ 0.63
VPS28-208ENST00000527797 TAPBPLQ9BX59 468 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 AMBNQ9NP70 447 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 PAK1IP1Q9NWT1 392 aaPredicted RBP18.97■□□□□ 0.63
VPS28-208ENST00000527797 PSORS1C1Q9UIG5 152 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 GPR52Q9Y2T5 361 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 KLF13Q9Y2Y9 288 aaPredicted RBP18.97■□□□□ 0.63
VPS28-208ENST00000527797 IER3IP1Q9Y5U9 82 aa18.97■□□□□ 0.63
VPS28-208ENST00000527797 PINLYPA6NC86 204 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 TRIM64CA6NLI5 447 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 CLCA1A8K7I4 914 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 SLC2A10O95528 541 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 SP1P08047 785 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 TSPAN19P0C672 248 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 CD46P15529 392 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 ZNF17P17021 662 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 IDUAP35475 653 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 CLK1P49759 484 aaKnown RBP18.96■□□□□ 0.63
VPS28-208ENST00000527797 SLC35A2P78381 396 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 FOXO1Q12778 655 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 SGCBQ16585 318 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 TMEM44Q2T9K0 475 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 ALG10Q5BKT4 473 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 SLC6A19Q695T7 634 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 ARHGAP11AQ6P4F7 1023 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 SULF2Q8IWU5 870 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 FDCSPQ8NFU4 85 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 SGCDQ92629 289 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 C5orf34Q96MH7 638 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 ZNF582Q96NG8 517 aaPredicted RBP18.96■□□□□ 0.63
VPS28-208ENST00000527797 PIGQQ9BRB3 760 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 NRIP3Q9NQ35 241 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 KLHL1Q9NR64 748 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 CMC2Q9NRP2 79 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 SLC6A5Q9Y345 797 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 CORINQ9Y5Q5 1042 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 SNTNA6NMZ2 147 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 RIIAD1A6NNX1 92 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 FTCDNL1E5RQL4 147 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 GTF2E2P29084 291 aaKnown RBP18.96■□□□□ 0.63
VPS28-208ENST00000527797 GRPRP30550 384 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 RPL5P46777 297 aaKnown RBP18.96■□□□□ 0.63
VPS28-208ENST00000527797 NR1H2P55055 460 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 RPL18Q07020 188 aaKnown RBP18.96■□□□□ 0.63
VPS28-208ENST00000527797 PMS2P3Q13401 168 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 AHSA2Q719I0 299 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 BCDIN3DQ7Z5W3 292 aaKnown RBP18.96■□□□□ 0.63
VPS28-208ENST00000527797 LRRC75AQ8NAA5 344 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 ANKK1Q8NFD2 765 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 GGHQ92820 318 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 MYDGFQ969H8 173 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 UBL7Q96S82 380 aaPredicted RBP18.96■□□□□ 0.63
VPS28-208ENST00000527797 HES7Q9BYE0 225 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.96■□□□□ 0.63
VPS28-208ENST00000527797 FN3KQ9H479 309 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 ERVK-18Q9QC07 812 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 MRPS18CQ9Y3D5 142 aaKnown RBP18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms