RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 AGPAT2O15120 278 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 UGT1A9O60656 530 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 NOL3O60936 208 aaKnown RBP2.64□□□□□ -1.99
CD44-215ENST00000525241 OPN1MWP04001 364 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 GIPP09681 153 aaPredicted RBP2.64□□□□□ -1.99
CD44-215ENST00000525241 OPN1MW2P0DN77 364 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 OPN1MW3P0DN78 364 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 HNRNPA2B1P22626 353 aaKnown RBP2.64□□□□□ -1.99
CD44-215ENST00000525241 OTX2P32243 289 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 DDOSTP39656 456 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 GLP1RP43220 463 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 VDAC2P45880 294 aaPredicted RBP2.64□□□□□ -1.99
CD44-215ENST00000525241 PKNOX1P55347 436 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 VGLL4Q14135 290 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 GANABQ14697 944 aaKnown RBP2.64□□□□□ -1.99
CD44-215ENST00000525241 SLC15A2Q16348 729 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 BOLA3Q53S33 107 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 CARD16Q5EG05 197 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 C1orf220Q5T0J3 134 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 ZNF691Q5VV52 312 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 SLC25A24Q6NUK1 477 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 CCDC80Q76M96 950 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 SLC26A11Q86WA9 606 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 OR6X1Q8NH79 312 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 OR9G1Q8NH87 305 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 FANK1Q8TC84 345 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 SYAP1Q96A49 352 aaPredicted RBP2.64□□□□□ -1.99
CD44-215ENST00000525241 CMTM7Q96FZ5 175 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 FAM210BQ96KR6 192 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 MRPL45Q9BRJ2 306 aaKnown RBP2.64□□□□□ -1.99
CD44-215ENST00000525241 RAB34Q9BZG1 259 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 LRRN3Q9H3W5 708 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 RMND5AQ9H871 391 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 UFSP2Q9NUQ7 469 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 NUFIP1Q9UHK0 495 aaKnown RBP2.64□□□□□ -1.99
CD44-215ENST00000525241 RPL36Q9Y3U8 105 aaKnown RBP2.64□□□□□ -1.99
CD44-215ENST00000525241 TIMM10BQ9Y5J6 103 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 ASTN1O14525 1302 aa2.64□□□□□ -1.99
CD44-215ENST00000525241 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.63□□□□□ -1.99
CD44-215ENST00000525241 NSG1A0A0A6YYJ2 146 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 METTL21EPA6NDL7 271 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 ICOSLGO75144 302 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 AP2A1O95782 977 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 UGT2B4P06133 528 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 ARRB1P49407 418 aaPredicted RBP2.63□□□□□ -1.99
CD44-215ENST00000525241 CRISP3P54108 245 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 KLHL30Q0D2K2 578 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 ATP6AP1Q15904 470 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 SAMD4BQ5PRF9 694 aaKnown RBP2.63□□□□□ -1.99
CD44-215ENST00000525241 OR52E8Q6IFG1 317 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 ZNF620Q6ZNG0 422 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 PAQR7Q86WK9 346 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 TMEM61Q8N0U2 210 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 OR2T3Q8NH03 318 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 TRMT10AQ8TBZ6 339 aaKnown RBP2.63□□□□□ -1.99
CD44-215ENST00000525241 TMEM158Q8WZ71 300 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 TBC1D31Q96DN5 1066 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 RNF2Q99496 336 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 ROGDIQ9GZN7 287 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 RBKSQ9H477 322 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 REEP4Q9H6H4 257 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 CCL28Q9NRJ3 127 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 HOXC10Q9NYD6 342 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 CLCF1Q9UBD9 225 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 KIF16BQ96L93 1317 aa2.63□□□□□ -1.99
CD44-215ENST00000525241 COL4A4P53420 1690 aaPredicted RBP2.63□□□□□ -1.99
CD44-215ENST00000525241 PNPLA6Q8IY17 1366 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 LOC110117498-PIK3R3F6TDL0 507 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 TMX2-CTNND1H3BSU7 103 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 K7EQM0 130 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 ARPC3O15145 178 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 NBR2O15453 112 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 MAGEB4O15481 346 aaPredicted RBP2.62□□□□□ -1.99
CD44-215ENST00000525241 RGS16O15492 202 aaPredicted RBP2.62□□□□□ -1.99
CD44-215ENST00000525241 RIPK2O43353 540 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 GUCA1CO95843 209 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 SLC25A27O95847 323 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 KLK3P07288 261 aaPredicted RBP2.62□□□□□ -1.99
CD44-215ENST00000525241 TDGF1P13385 188 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 PCMT1P22061 227 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 PSMA5P28066 241 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 FMO3P31513 532 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 BTCP35070 178 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 CASP4P49662 377 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 TDGF1P3P51864 188 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 EFNB2P52799 333 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 SUCLG1P53597 346 aaKnown RBP2.62□□□□□ -1.99
CD44-215ENST00000525241 LINC00315P59091 139 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 TNFRSF17Q02223 184 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 ASPHQ12797 758 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 MADCAM1Q13477 382 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 PSG5Q15238 335 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 KCTD19Q17RG1 926 aaPredicted RBP2.62□□□□□ -1.99
CD44-215ENST00000525241 MICBQ29980 383 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 TSPO2Q5TGU0 170 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 GPR157Q5UAW9 335 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 TMEM225Q6GV28 225 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 ZNF621Q6ZSS3 439 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 PGAP1Q75T13 922 aa2.62□□□□□ -1.99
CD44-215ENST00000525241 CCDC50Q8IVM0 306 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms