RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 SLC15A3Q8IY34 581 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 TMEM99Q8N816 258 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 SMYD1Q8NB12 490 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 PCYOX1LQ8NBM8 494 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 OR6T1Q8NGN1 323 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 NRGNQ92686 78 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 NINJ1Q92982 152 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 TMEM45BQ96B21 275 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 RCN3Q96D15 328 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 ZHX1-C8orf76Q96EF9 292 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 KTI12Q96EK9 354 aaPredicted RBP8.59□□□□□ -1.03
RNF4-221ENST00000513643 SLC41A3Q96GZ6 507 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 ELAC2Q9BQ52 826 aaKnown RBP8.59□□□□□ -1.03
RNF4-221ENST00000513643 USB1Q9BQ65 265 aaKnown RBP8.59□□□□□ -1.03
RNF4-221ENST00000513643 TMEM204Q9BSN7 226 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 ZNF426Q9BUY5 554 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 POLDIP3Q9BY77 421 aaKnown RBP8.59□□□□□ -1.03
RNF4-221ENST00000513643 CXXC4Q9H2H0 198 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 LIME1Q9H400 295 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 C12orf49Q9H741 205 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 GID8Q9NWU2 228 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 KLHL28Q9NXS3 571 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 EMC3Q9P0I2 261 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 MALT1Q9UDY8 824 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 PRSS50Q9UI38 385 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 USP22Q9UPT9 525 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 FLVCR1Q9Y5Y0 555 aa8.59□□□□□ -1.03
RNF4-221ENST00000513643 PRRC2AP48634 2157 aaKnown RBP8.59□□□□□ -1.03
RNF4-221ENST00000513643 DYNC1I1O14576 645 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 VAMP5O95183 116 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 ADAP00813 363 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 PNMTP11086 282 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 IGHV1-2P23083 117 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 GYS2P54840 703 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 LTBQ06643 244 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 EXOC3L2Q2M3D2 409 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 INTS11Q5TA45 600 aaKnown RBP8.58□□□□□ -1.04
RNF4-221ENST00000513643 FBXW9Q5XUX1 488 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 PPP4R4Q6NUP7 873 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 ERICH5Q6P6B1 374 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 ZNF613Q6PF04 617 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 C5orf46Q6UWT4 87 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 CDH24Q86UP0 819 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 RBM45Q8IUH3 476 aaKnown RBP8.58□□□□□ -1.04
RNF4-221ENST00000513643 EPHX4Q8IUS5 362 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 LURAP1LQ8IV03 231 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 POU5F2Q8N7G0 328 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 STEAP2Q8NFT2 490 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 OR52E4Q8NGH9 312 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 IGFBPL1Q8WX77 278 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 TAAR8Q969N4 342 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 ZNF775Q96BV0 537 aaPredicted RBP8.58□□□□□ -1.04
RNF4-221ENST00000513643 MBD6Q96DN6 1003 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 SLC47A1Q96FL8 570 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 HOPXQ9BPY8 73 aaPredicted RBP8.58□□□□□ -1.04
RNF4-221ENST00000513643 ECSITQ9BQ95 431 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 NAA11Q9BSU3 229 aaPredicted RBP8.58□□□□□ -1.04
RNF4-221ENST00000513643 TMEM43Q9BTV4 400 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 AMBRA1Q9C0C7 1298 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 KLHL4Q9C0H6 718 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 ACTR6Q9GZN1 396 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 CACYBPQ9HB71 228 aaKnown RBP8.58□□□□□ -1.04
RNF4-221ENST00000513643 FANCFQ9NPI8 374 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 ZNF226Q9NYT6 803 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 B3GAT1Q9P2W7 334 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 ACANP16112 2415 aa8.58□□□□□ -1.04
RNF4-221ENST00000513643 FAM220BPB1ANY3 271 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 M0R3H8 397 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 CASKO14936 926 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 OR2T1O43869 369 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 ZNF432O94892 652 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 AKR7A3O95154 331 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 OPN1SWP03999 348 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 PRDX6P30041 224 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 KDELR2P33947 212 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 CDH12P55289 794 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 RGS8P57771 180 aaPredicted RBP8.57□□□□□ -1.04
RNF4-221ENST00000513643 OR7A5Q15622 319 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 FXNQ16595 210 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 MMEL1Q495T6 779 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 ALG10BQ5I7T1 473 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 OTUD3Q5T2D3 398 aaPredicted RBP8.57□□□□□ -1.04
RNF4-221ENST00000513643 FAM69AQ5T7M9 428 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 ANKRD34AQ69YU3 496 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 SPNS3Q6ZMD2 512 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 WDR88Q6ZMY6 472 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 CREB3L2Q70SY1 520 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 TMEM200AQ86VY9 491 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 ZNF433Q8N7K0 673 aaPredicted RBP8.57□□□□□ -1.04
RNF4-221ENST00000513643 ADPRHL1Q8NDY3 354 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 OR9K2Q8NGE7 335 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 RASSF5Q8WWW0 418 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 HSD17B8Q92506 261 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 S100PBPQ96BU1 408 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 DNAJA3Q96EY1 480 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 MUS81Q96NY9 551 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 ZNF385AQ96PM9 386 aaKnown RBP8.57□□□□□ -1.04
RNF4-221ENST00000513643 HS3ST6Q96QI5 342 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 PRSS27Q9BQR3 290 aa8.57□□□□□ -1.04
RNF4-221ENST00000513643 MED18Q9BUE0 208 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms