RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 YRDCQ86U90 279 aaKnown RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 ZNF681Q96N22 645 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 PKP2Q99959 881 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 ACPTQ9BZG2 426 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 DUSP22Q9NRW4 184 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 USP36Q9P275 1121 aaKnown RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 STUB1Q9UNE7 303 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 RHBDD3Q9Y3P4 386 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 CT45A6P0DMU7 189 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 CT45A5P0DMU8 189 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 CT45A7P0DMV0 189 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 CT45A8P0DMV1 189 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 CT45A9P0DMV2 189 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 PRKAR1BP31321 381 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 TMPRSS3P57727 454 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 NXPH1P58417 271 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 RUNDC3AQ59EK9 446 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 CT45A2Q5DJT8 189 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 CT45A1Q5HYN5 189 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 FAM69AQ5T7M9 428 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 LILRA6Q6PI73 481 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 SBSNQ6UWP8 590 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 SMIM15Q7Z3B0 74 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 SPRED1Q7Z699 444 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 CPOQ8IVL8 374 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 OR11G2Q8NGC1 345 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 OR5D16Q8NGK9 328 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 CT45A3Q8NHU0 189 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 SNAPC3Q92966 411 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 ZMYND19Q96E35 227 aaPredicted RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 SORCS2Q96PQ0 1159 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 IL21Q9HBE4 155 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 SPACA1Q9HBV2 294 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 C12orf4Q9NQ89 552 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 SDR39U1Q9NRG7 319 aaPredicted RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 MED17Q9NVC6 651 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 ADAMTS6Q9UKP5 1117 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 TIMM10BQ9Y5J6 103 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 C5P01031 1676 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 NHSQ6T4R5 1651 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 RGPD8O14715 1765 aaPredicted RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 NAV1Q8NEY1 1877 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 CCDC163A0A0D9SF12 145 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 KDM4EB2RXH2 506 aaPredicted RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 NARSO43776 548 aaKnown RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 SEC14L2O76054 403 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 COX6B1P14854 86 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 ADH6P28332 368 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 PNLIPRP2P54317 469 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 LIM2P55344 173 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 HNRNPA0Q13151 305 aaKnown RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 MEF2DQ14814 521 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 ZNF404Q494X3 552 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 CCNJQ5T5M9 372 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 Q6ZS52 159 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 TSPYL5Q86VY4 417 aaPredicted RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 LRRC18Q8N456 261 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 OR4D9Q8NGE8 314 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 OR8H1Q8NGG4 311 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 FEVQ99581 238 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 KCNJ15Q99712 375 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 SLC30A2Q9BRI3 323 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 NICN1Q9BSH3 213 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 TEX101Q9BY14 249 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 LAT2Q9GZY6 243 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 RNF32Q9H0A6 362 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 OR52D1Q9H346 318 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 ESRP2Q9H6T0 727 aaKnown RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 VSX1Q9NZR4 365 aaPredicted RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 POMT2Q9UKY4 750 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 FXYD6-FXYD2A0A087WZ82 144 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 H7C2Y5 167 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 ADH4P08319 380 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 TNFRSF1AP19438 455 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 AGTR1P30556 359 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 SUB1P53999 127 aaKnown RBP eCLIP3.93□□□□□ -1.78
VCAN-209ENST00000513016 TAS2R20P59543 309 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 PPP1R8Q12972 351 aaKnown RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 RPS26P11Q5JNZ5 115 aaPredicted RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 C1orf140Q5VVS0 124 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 MEPCEQ7L2J0 689 aaKnown RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 NPRL2Q8WTW4 380 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 LINC01599Q8WXQ3 324 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 RND1Q92730 232 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 HAS2Q92819 552 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 LINC00615Q96LM1 132 aaPredicted RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 TSSK2Q96PF2 358 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 ATF6BQ99941 703 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 TREX2Q9BQ50 279 aaPredicted RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 FXYD6Q9H0Q3 95 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 FBXO7Q9Y3I1 522 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 UBR2Q8IWV8 1755 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 CLCA1A8K7I4 914 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 DENRO43583 198 aaKnown RBP3.93□□□□□ -1.78
VCAN-209ENST00000513016 IFNA7P01567 189 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 IFNA17P01571 189 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 EPHA1P21709 976 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 CLN3Q13286 438 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 MADCAM1Q13477 382 aa3.93□□□□□ -1.78
VCAN-209ENST00000513016 PGGHGQ32M88 737 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms