RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TOX3O15405 576 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 IRAK2O43187 625 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 FGF16O43320 207 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 DGKAP23743 735 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 CD1CP29017 333 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 P2RX1P51575 399 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 EFNB1P98172 346 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 ARHGAP11AQ6P4F7 1023 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 OLIG3Q7RTU3 272 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 TRAPPC5Q8IUR0 188 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 CPOQ8IVL8 374 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 ACBD4Q8NC06 268 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 OR7G2Q8NG99 324 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 OR56B1Q8NGI3 324 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 PPP1R1CQ8WVI7 109 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 GHSRQ92847 366 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 FGF11Q92914 225 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 FBXL4Q9UKA2 621 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 SBF1O95248 1867 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 DRGXA6NNA5 263 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 CD79AP11912 226 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 UBE2NLQ5JXB2 153 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 SLC35D3Q5M8T2 416 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 REEP3Q6NUK4 255 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 BPIFB2Q8N4F0 458 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 OR5AP2Q8NGF4 316 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 DVL3Q92997 716 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 SYNPO2LQ9H987 977 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 LANCL2Q9NS86 450 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 FBXO4Q9UKT5 387 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 RUVBL1Q9Y265 456 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 MMP24Q9Y5R2 645 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 TPT1P13693 172 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 PYCR1P32322 319 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 CD200P41217 278 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 PCBP4P57723 403 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 LY6G6FQ5SQ64 297 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 OR4C16Q8NGL9 310 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 OR2A12Q8NGT7 310 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 OR8D1Q8WZ84 308 aa11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 RSPO3Q9BXY4 272 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 TMEM184BQ9Y519 407 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-213ENST00000511496 KDM4EB2RXH2 506 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 MAGEB4O15481 346 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 PRAMEF4O60810 478 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 ITGA5P08648 1049 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 RNH1P13489 461 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 OMPP47874 163 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 PGFP49763 221 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 ACSM1Q08AH1 577 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 ZNF750Q32MQ0 723 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 KHDC3LQ587J8 217 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 EXOSC6Q5RKV6 272 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 PRAMEF9Q5VWM5 478 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 HIST2H3AQ71DI3 136 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 RANBP3LQ86VV4 465 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 NPRL2Q8WTW4 380 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 CDCA3Q99618 268 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 C19orf12Q9NSK7 152 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 CACFD1Q9UGQ2 172 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 NOP16Q9Y3C1 178 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 PSMD9O00233 223 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 PPP1R2P9O14990 202 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 THBS1P07996 1170 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 OR8G3PP0DMU2 310 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 PGAM2P15259 253 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 ID4P47928 161 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 GPR15P49685 360 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 PCBP3P57721 371 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 LILRA4P59901 499 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 RPS15P62841 145 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 ZNF674Q2M3X9 581 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 FNDC3BQ53EP0 1204 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 FBXO46Q6PJ61 603 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 BHLHA9Q7RTU4 235 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 SZRD1Q7Z422 152 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 BAP18Q8IXM2 172 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 NLGN1Q8N2Q7 840 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 SYNPRQ8TBG9 265 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 S100A16Q96FQ6 103 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 ELF4Q99607 663 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 TMEM208Q9BTX3 173 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 SLC25A18Q9H1K4 315 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 TRPV4Q9HBA0 871 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 CHRNA9Q9UGM1 479 aa11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 NYNRINQ9P2P1 1898 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-213ENST00000511496 IDSB3KWA1 339 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 DCTN6O00399 190 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 SERPINA5P05154 406 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 ASGR2P07307 311 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 SLC35G4P0C7Q5 338 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 ARAFP10398 606 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 GALP22466 123 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 CAV2P51636 162 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 TRA2AQ13595 282 aaKnown RBP eCLIP11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 YOD1Q5VVQ6 348 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 OLFML2AQ68BL7 652 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 IL34Q6ZMJ4 242 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 KIRREL1Q96J84 757 aa11.1□□□□□ -0.63
LIMCH1-213ENST00000511496 UBQLN3Q9H347 655 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms