RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 HHATLQ9HCP6 504 aa7.27□□□□□ -1.25
SCN1A-207ENST00000507401 MIEF1Q9NQG6 463 aa7.27□□□□□ -1.25
SCN1A-207ENST00000507401 SDR39U1Q9NRG7 319 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-207ENST00000507401 SDHAF3Q9NRP4 125 aa7.27□□□□□ -1.25
SCN1A-207ENST00000507401 FAM118AQ9NWS6 357 aa7.27□□□□□ -1.25
SCN1A-207ENST00000507401 KLRF1Q9NZS2 232 aa7.27□□□□□ -1.25
SCN1A-207ENST00000507401 LEF1Q9UJU2 399 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-207ENST00000507401 FOXD3Q9UJU5 478 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-207ENST00000507401 MRTO4Q9UKD2 239 aaKnown RBP7.27□□□□□ -1.25
SCN1A-207ENST00000507401 STUB1Q9UNE7 303 aa7.27□□□□□ -1.25
SCN1A-207ENST00000507401 RABL2BQ9UNT1 228 aa7.27□□□□□ -1.25
SCN1A-207ENST00000507401 INTS1Q8N201 2190 aaKnown RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 KRTAP9-6A0A140TA67 174 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 MBD3L4A6NDZ8 208 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 MBD3L3A6NE82 208 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 MBD3L5A6NJ08 208 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 METTL15A6NJ78 407 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ZSCAN5BA6NJL1 495 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 FAM90A27PA6NNH2 459 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 G3V2T6 193 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 UPK1AO00322 258 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 NME4O00746 187 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 DVL2O14641 736 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 NOS1APO75052 506 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 MFN2O95140 757 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 SNAP29O95721 258 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 IL18BPO95998 194 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 CHRNGP07510 517 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 IL7P13232 177 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 DDX5P17844 614 aaKnown RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 SLC6A2P23975 617 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 CHMP24386 653 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 HLA-DMAP28067 261 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 IL12BP29460 328 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 NTSP30990 170 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 SRD5A2P31213 254 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 CLK1P49759 484 aaKnown RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 CLK3P49761 638 aaKnown RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 GAS1P54826 345 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 PSMD4P55036 377 aaKnown RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 GFRA1P56159 465 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 IFITM3Q01628 133 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 TOMM20Q15388 145 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ZNHIT3Q15649 155 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 PRSS53Q2L4Q9 553 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 UGT3A2Q3SY77 523 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 RFTN2Q52LD8 501 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 EIPR1Q53HC9 387 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ARMCX4Q5H9R4 360 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 WIPI1Q5MNZ9 446 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ATAD3CQ5T2N8 411 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ZNF691Q5VV52 312 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ZCCHC12Q6PEW1 402 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 POMZP3Q6PJE2 187 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ENPP6Q6UWR7 440 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 NPSR1Q6W5P4 371 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ZNF782Q6ZMW2 699 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 GDPGP1Q6ZNW5 385 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 YRDCQ86U90 279 aaKnown RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 NOXA1Q86UR1 476 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 SLC44A2Q8IWA5 706 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 RIMKLAQ8IXN7 391 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 Q8N3U1 123 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 FAM83FQ8NEG4 500 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 MBD3L2Q8NHZ7 208 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 PSMA8Q8TAA3 256 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ZFAND1Q8TCF1 268 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 HOXB13Q92826 284 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 SLC38A4Q969I6 547 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 EGLN2Q96KS0 407 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ZFP3Q96NJ6 502 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 TMEM246Q9BRR3 403 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 LMF2Q9BU23 707 aaKnown RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 NUAK2Q9H093 628 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 GABARAPL1Q9H0R8 117 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ANKRA2Q9H9E1 313 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 LRTM1Q9HBL6 345 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 GALNT9Q9HCQ5 603 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 Q9N2J8 555 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 TNFRSF12AQ9NP84 129 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ACOXLQ9NUZ1 547 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ZIM2Q9NZV7 527 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 CCDC167Q9P0B6 97 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 NTMQ9P121 344 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ZMAT5Q9UDW3 170 aaKnown RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 GLS2Q9UI32 602 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ATPIF1Q9UII2 106 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 FBXO9Q9UK97 447 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 ABCG2Q9UNQ0 655 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 SLC6A5Q9Y345 797 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 RBMX2Q9Y388 322 aaKnown RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 OR10H1Q9Y4A9 318 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 POLR3HQ9Y535 204 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-207ENST00000507401 DNAJC15Q9Y5T4 150 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 WIF1Q9Y5W5 379 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 LYVE1Q9Y5Y7 322 aa7.26□□□□□ -1.25
SCN1A-207ENST00000507401 LOC100130705A0A1B0GUX0 176 aa7.25□□□□□ -1.25
SCN1A-207ENST00000507401 TUBAL3A6NHL2 446 aa7.25□□□□□ -1.25
SCN1A-207ENST00000507401 EFCAB9A8MZ26 197 aa7.25□□□□□ -1.25
SCN1A-207ENST00000507401 H0YC42 278 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms