RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 SHISA3A0PJX4 238 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 ZNF879B4DU55 563 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 B4DXG7 233 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 NUDT21O43809 227 aaKnown RBP10.95□□□□□ -0.66
NUP54-202ENST00000502850 SSX4O60224 188 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 PIAS2O75928 621 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 GLCEO94923 617 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 UTS2O95399 124 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 CLUP10909 449 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 SPI1P17947 270 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 RAB3BP20337 219 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 APEX1P27695 318 aaKnown RBP10.95□□□□□ -0.66
NUP54-202ENST00000502850 HLA-DMAP28067 261 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 IL12BP29460 328 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 NR4A2P43354 598 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 GDI2P50395 445 aaKnown RBP10.95□□□□□ -0.66
NUP54-202ENST00000502850 OR12D2P58182 307 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 UBXN2BQ14CS0 331 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 KCNJ8Q15842 424 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 ZNF74Q16587 644 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 DEFB133Q30KQ1 61 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 ACSM3Q53FZ2 586 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 HLA-DQA1Q5Y7H0 255 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 SLC6A19Q695T7 634 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 PYHIN1Q6K0P9 492 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 METTL27Q8N6F8 245 aaPredicted RBP10.95□□□□□ -0.66
NUP54-202ENST00000502850 DUSP18Q8NEJ0 188 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 OR6F1Q8NGZ6 308 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 PTPMT1Q8WUK0 201 aaPredicted RBP10.95□□□□□ -0.66
NUP54-202ENST00000502850 GHSRQ92847 366 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 DAZLQ92904 295 aaKnown RBP10.95□□□□□ -0.66
NUP54-202ENST00000502850 ZMYND19Q96E35 227 aaPredicted RBP10.95□□□□□ -0.66
NUP54-202ENST00000502850 CMTM3Q96MX0 182 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 NEDD4LQ96PU5 975 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 YIPF2Q9BWQ6 316 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 NMNAT2Q9BZQ4 307 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 NANSQ9NR45 359 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 PNO1Q9NRX1 252 aaKnown RBP10.95□□□□□ -0.66
NUP54-202ENST00000502850 COPS7AQ9UBW8 275 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 SIT1Q9Y3P8 196 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 SIRT4Q9Y6E7 314 aaPredicted RBP10.95□□□□□ -0.66
NUP54-202ENST00000502850 IGKV3D-11A0A0A0MRZ8 115 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 FAM240BA0A1B0GVZ2 78 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 A0A1W2PQD3 144 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 OR6C76A6NM76 312 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 HSPB2A8KAH6 182 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 NOTOA8MTQ0 251 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 PROB1E7EW31 1015 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 PDCD5O14737 125 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 GNB5O14775 395 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 FLRT2O43155 660 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 LYRM1O43325 122 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 EIF4E2O60573 245 aaKnown RBP10.95□□□□□ -0.66
NUP54-202ENST00000502850 TXNDC12O95881 172 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 GYPBP06028 91 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 CD14P08571 375 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 TACSTD2P09758 323 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 NPR2P20594 1047 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 FBLP22087 321 aaKnown RBP10.95□□□□□ -0.66
NUP54-202ENST00000502850 SHC1P29353 583 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 CCR4P51679 360 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 STARD6P59095 220 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 SIRPAP78324 504 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 PITPNAQ00169 270 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 CSTF1Q05048 431 aaKnown RBP10.95□□□□□ -0.66
NUP54-202ENST00000502850 HSPB2Q16082 182 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 NDUFA5Q16718 116 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 ZFP69Q49AA0 526 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 BICRALQ6AI39 1079 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 GPR139Q6DWJ6 353 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 TTLL10Q6ZVT0 673 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 OVCH1Q7RTY7 1134 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 FAM220AQ7Z4H9 259 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 PRSS42Q7Z5A4 293 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 KCTD20Q7Z5Y7 419 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 C10orf53Q8N6V4 93 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 NPEPL1Q8NDH3 523 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 ZNF563Q8TA94 476 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 HSPA12BQ96MM6 686 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 SNX18Q96RF0 628 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 KCNJ15Q99712 375 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 CTRCQ99895 268 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 MRI1Q9BV20 369 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 OR8D2Q9GZM6 311 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 NEK6Q9HC98 313 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 KLHL1Q9NR64 748 aa10.95□□□□□ -0.66
NUP54-202ENST00000502850 CEP192Q8TEP8 1941 aa10.94□□□□□ -0.66
NUP54-202ENST00000502850 IGKV1D-42A0A075B6H8 117 aa10.94□□□□□ -0.66
NUP54-202ENST00000502850 ARPC4-TTLL3A0A0A6YYG9 625 aa10.94□□□□□ -0.66
NUP54-202ENST00000502850 A0A1B0GTQ1 180 aa10.94□□□□□ -0.66
NUP54-202ENST00000502850 LINC00854A0A1B0GVQ3 168 aa10.94□□□□□ -0.66
NUP54-202ENST00000502850 TCRBV16S1A1N1A0A5B0 115 aa10.94□□□□□ -0.66
NUP54-202ENST00000502850 E9PI62 339 aa10.94□□□□□ -0.66
NUP54-202ENST00000502850 TO15178 435 aa10.94□□□□□ -0.66
NUP54-202ENST00000502850 PLA2G10O15496 165 aa10.94□□□□□ -0.66
NUP54-202ENST00000502850 ORC5O43913 435 aa10.94□□□□□ -0.66
NUP54-202ENST00000502850 CDC40O60508 579 aaKnown RBP eCLIP10.94□□□□□ -0.66
NUP54-202ENST00000502850 GFRA3O60609 400 aa10.94□□□□□ -0.66
NUP54-202ENST00000502850 TFP02787 698 aa10.94□□□□□ -0.66
NUP54-202ENST00000502850 IGKV3-11P04433 115 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms