RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 OR4C11Q6IEV9 310 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 CCDC137Q6PK04 289 aaKnown RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 CES3Q6UWW8 571 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 DNM1P46Q6ZS02 220 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 LCA5Q86VQ0 697 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 P2RY8Q86VZ1 359 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 ZC3HC1Q86WB0 502 aaKnown RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 IFNEQ86WN2 208 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 MISPQ8IVT2 679 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 C9orf40Q8IXQ3 194 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 TEX29Q8N6K0 151 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 OR7G3Q8NG95 312 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 OR1J4Q8NGS1 313 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 TMEM163Q8TC26 289 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 ZNF675Q8TD23 568 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 ZNF473Q8WTR7 871 aaKnown RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 RNF138Q8WVD3 245 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 TMEM18Q96B42 140 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 ANKRD9Q96BM1 317 aaPredicted RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 ZC3HAV1LQ96H79 300 aaKnown RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 METTL2AQ96IZ6 378 aaKnown RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 UBXN10Q96LJ8 280 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 RILPQ96NA2 401 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 WFIKKN1Q96NZ8 548 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 SERPINI1Q99574 410 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 CPNE1Q99829 537 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 EGFL8Q99944 293 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 FAIM2Q9BWQ8 316 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 UGT2B28Q9BY64 529 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 PTGES2Q9H7Z7 377 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 RNF122Q9H9V4 155 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 FN3KRPQ9HA64 309 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 CXorf21Q9HAI6 301 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 BRF2Q9HAW0 419 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 PLEKHA2Q9HB19 425 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 NMRAL1Q9HBL8 299 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 MYOZ1Q9NP98 299 aaPredicted RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 SAYSD1Q9NPB0 183 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 FBXO6Q9NRD1 293 aaPredicted RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 IARS2Q9NSE4 1012 aaKnown RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 NUDT4Q9NZJ9 180 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 GALPQ9UBC7 116 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 SPRR3Q9UBC9 169 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 CLCF1Q9UBD9 225 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 CIDEBQ9UHD4 219 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 PACSIN2Q9UNF0 486 aaPredicted RBP3.44□□□□□ -1.86
USP54-217ENST00000498213 GPR52Q9Y2T5 361 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 AP4B1Q9Y6B7 739 aa3.44□□□□□ -1.86
USP54-217ENST00000498213 A0A087WZY1 265 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 UQCRHLA0A096LP55 91 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 IGLV3-32A0A0A0MS00 114 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 A0A0A6YYD5 115 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 PINLYPA6NC86 204 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 OR6C68A6NDL8 312 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 SLC22A20A6NK97 555 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 GJE1A6NN92 205 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 GOLGA8KD6RF30 607 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 TRIM77I1YAP6 450 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 K7EPI3 171 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 KIF2AO00139 706 aaPredicted RBP3.43□□□□□ -1.86
USP54-217ENST00000498213 DNALI1O14645 258 aaPredicted RBP3.43□□□□□ -1.86
USP54-217ENST00000498213 KERAO60938 352 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 LDB3O75112 727 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 TNFSF13O75888 250 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 WISP3O95389 354 aaPredicted RBP3.43□□□□□ -1.86
USP54-217ENST00000498213 ETHE1O95571 254 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 AIFM1O95831 613 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 GUCA1CO95843 209 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 TGFAP01135 160 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 ABCB1P08183 1280 aaPredicted RBP3.43□□□□□ -1.86
USP54-217ENST00000498213 ZSCAN5DPP0CG00 497 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 PSMB1P20618 241 aaKnown RBP3.43□□□□□ -1.86
USP54-217ENST00000498213 PCMT1P22061 227 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 MT3P25713 68 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 PIK3R1P27986 724 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 ABCD3P28288 659 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 CASQ1P31415 396 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 KRT20P35900 424 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 UGT2B10P36537 528 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 GP5P40197 560 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 EIF1P41567 113 aaKnown RBP3.43□□□□□ -1.86
USP54-217ENST00000498213 SSR2P43308 183 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 DNASE1L1P49184 302 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 RAP1GDS1P52306 607 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 PNLIPRP2P54317 469 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 OLR1P78380 273 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 CAV1Q03135 178 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 LOXL1Q08397 574 aaPredicted RBP3.43□□□□□ -1.86
USP54-217ENST00000498213 CHIT1Q13231 466 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 SLAMF1Q13291 335 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 DOC2AQ14183 400 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 IL13RA2Q14627 380 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 P2RY6Q15077 328 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 PPP1R7Q15435 360 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 GUSBP1Q15486 140 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 KCTD19Q17RG1 926 aaPredicted RBP3.43□□□□□ -1.86
USP54-217ENST00000498213 FAM83EQ2M2I3 478 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 GGTA1PQ4G0N0 100 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 PDSS1Q5T2R2 415 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 203.7 ms